Gene detail information of Glyur000709s00024187.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29270.2 | 4.00E-78 | RING/U-box superfamily protein |
| NR | NP_001241055.1 | 1.10E-156 | uncharacterized protein LOC100809368 [Glycine max] |
| trEMBL | tr|C6TIH4|C6TIH4_SOYBN | 4.00E-157 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G05870.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00709 | 84012 | 84809 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000709s00024187.1 | PF13445.1 | zf-RING_UBOX | 45 | 84 | 1.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.531 |
| SRR1783600 | control | 9.374 |
| SRR1783602 | moderate drought stress | 8.563 |
| SRR1811619 | moderate drought stress | 8.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.217 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.131 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.718 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.713 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.720 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.804 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.879 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.613 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.173 |
| SRR2967015 | Control (Tissue:root) | 6.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.070 |
| SRR9715740 | Leave | 9.077 |
| SRR9715741 | Leave | 5.527 |
| SRR9715739 | Root | 5.650 |
| SRR9715742 | Root | 5.286 |
| SRR9715743 | Root | 4.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.125 |
| SRR8749028 | MeJA induced 9h | 4.039 |
| SRR8749029 | MeJA induced 9h | 3.640 |
| SRR8749030 | Uninduced | 2.456 |
| SRR8749031 | Uninduced | 1.291 |
| SRR8749032 | Uninduced | 1.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.600 |
| SRR8400027 | Control-Root | 12.360 |