Gene detail

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Gene detail information of Glyur000714s00022854.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17860.1	2.00E-32	jasmonate-zim-domain protein 3
NR	XP_006580445.1	3.66E-168	PREDICTED: protein TIFY 6B-like isoform X3 [Glycine max]
Swissprot	tr\|Q9LVI4\|TIF6B_ARATH	7.00E-44	Protein TIFY 6B
trEMBL	tr\|I1K5Q2\|I1K5Q2_SOYBN	1.00E-168	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G34960.6}

Sequence

Transcript Sequence

>Glyur000714s00022854.1
CACACTTCTTTTTCTTTTCTTCTTCCGTAGTTGGAACTTGGAACCTTTGGTCTTCTCTGTTTCTCTCTCTCTCTGGTTGATTGATGTTGTTGTGAGGGAGAAACAAGTTTTTGTTTTTGTTGTTACTTTCCCTTTTCTTTGTGAAGAAAGAGGATTTTNGCAGGTGGGTTTTTTCATTGGATTGTTCTTACCACTGTCACAGTTTTTGTATCTGAAAATGGAGAGAGATTTCATGGGTTTGAGCTCAAAAGAACCACTCTCTATGGTCAAGGAGGAAATGATCGACGATGGTCGCAAAGACTCAGGCTTCACGAAGGGTTCAGTTGCACAATGGCCTTTCTCGAACAAAGTCTCTTGTGCTGTTCCACATTTGATGTCTTTCAAGGTTTCTCAAGATGACAAGGCTAAGATGTTATCTGATCCCATGACATCTGTCGGGTTTGTGTCTGAACCCCAGAAATCTTTCAATCACGCTGGGCAAGGTGGCTCTCATTTTTCGCTGACTCCGTATCCTGTACAACATGATGTGAAGATGTTTTCAGTTTCCAATCAAGCAATTTCAGTTTCTCTGGGGAACCCATTCCTGAAGAATCATTTTGCTGCTGNTGGTCAGAATATGAATGGTAATAGTAATAGTAATGTGAAGCTGCCGCTACTTGGGGGAATACCCATTTCAGTGCCTNAATCATCTCTTCCCACCAGTGGTGCTGTTGCTGGAATAACTGAATCATGTTTGAAACCATCTGCGCCTTCTGCCCAACTTACCATCTTCTATGCGGGTACTGTCAATGTCTTCGATGATATCTCTGCTGAAAGGGCACAAGCTATCATGTTGTTGGCTGGCAATGGCTTATCTGTGGCTTCTAACATGATGGCACAGACAAAAGTTCAGACACCTGGCTCTAAGTTGGCTGCTGGTGATGGTCTGCTTGTGAGTCAACCCGCAAATACACCACCACCGAGCTCTGGTATTTCAAGTCCTTTATCTGTTTCATCGCATACTGGTGCACAGTCGGGCAGTGGCTCAACTAGCACTGATGAATTTCTGGCAACTAAAACAACTGGTGTTCCCACCACTCCTGTTAGCAATGTGGAGCCTCCAAAAGTAGTCAATGTAGCCACTATGTTGACGTCAGCTGTGCCTCAGGCTCGGAAAGCATCCTTGGCTCGATTTTTAGAAAAGCGCAAGGAAAGGGTGATGAATGCAGCACCATATAACCTCAACAAAAATTNTGAAGAGTGTACCACTGCATAATACAGTGGTGGTAACTTCTCTGCAGGTACTGCTGCTATCAATACTCTCAGCCAAGCAAGGATAGCAGCCCCTACAATTTAGGAAACTATTTAAAAAGAAAAATATTGTTGTAATTGAAACCTAAAAATGTAAGAAGATGCTTTTATTTTTCGTTGATCAAAACTTGTGCTGACATTCTCAAGTACCGGACTACGTTCAGTAAAGATGTAATTCATTTACCTTAATTATGATTTCTGTGGTGTAGCAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00714	16081	19752	+

Gene family

Gene family	subfamily
Transcription Factors Family	Tify

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000714s00022854.1	PF06200.9	tify	175	210	2.00E-17
Glyur000714s00022854.1	PF09425.5	CCT_2	309	333	2.60E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.175
SRR1783600	control	35.359
SRR1783602	moderate drought stress	23.430
SRR1811619	moderate drought stress	23.402

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.759
DRR006520	Root Summer glycyrrhizin high producing strain	23.124
DRR006521	Root Winter glycyrrhizin high producing strain	30.728
DRR006522	Root Winter glycyrrhizin high producing strain	29.352
DRR006523	Root Summer glycyrrhizin low producing strain	20.790
DRR006524	Root Summer glycyrrhizin low producing strain	21.235
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.724
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.520

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	55.256
SRR2868004	Drought Stress(Tissue:root)	58.639
SRR2967015	Control (Tissue:root)	69.367

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	58.234
SRR9715740	Leave	21.299
SRR9715741	Leave	56.760
SRR9715739	Root	33.033
SRR9715742	Root	43.673
SRR9715743	Root	38.980

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	61.807
SRR8749028	MeJA induced 9h	42.941
SRR8749029	MeJA induced 9h	64.801
SRR8749030	Uninduced	95.282
SRR8749031	Uninduced	51.160
SRR8749032	Uninduced	110.293

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	55.195
SRR8400027	Control-Root	43.695