Gene detail information of Glyur000714s00022858.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01620.1 | 7.00E-46 | RNI-like superfamily protein |
| NR | AFK36453.1 | 7.22E-140 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9ZU90|SKI28_ARATH | 3.00E-54 | F-box protein SKIP28 |
| trEMBL | tr|I3S861|I3S861_LOTJA | 3.00E-140 | Uncharacterized protein {ECO:0000313|EMBL:AFK36453.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00714 | 34721 | 36291 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000714s00022858.1 | PF00646.28 | F-box | 25 | 60 | 0.00042 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.004 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.118 |
| SRR1811619 | moderate drought stress | 0.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.347 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.346 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.793 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.485 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.449 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.449 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.908 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.529 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.209 |
| SRR2967015 | Control (Tissue:root) | 5.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 38.574 |
| SRR9715740 | Leave | 52.538 |
| SRR9715741 | Leave | 36.901 |
| SRR9715739 | Root | 0.121 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.151 |
| SRR8749028 | MeJA induced 9h | 3.161 |
| SRR8749029 | MeJA induced 9h | 1.661 |
| SRR8749030 | Uninduced | 1.436 |
| SRR8749031 | Uninduced | 2.206 |
| SRR8749032 | Uninduced | 2.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.492 |
| SRR8400027 | Control-Root | 0.849 |