Gene detail information of Glyur000714s00022868.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G33760.10tRNA synthetase class II (D, K and N) family protein
NRXP_004503382.10PREDICTED: aspartate--tRNA ligase-like isoform X1 [Cicer arietinum]
COGYP_722047.10aspartyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
Swissprottr|Q6F2U9|SYK_ORYSJ6.00E-13Lysine--tRNA ligase
trEMBLtr|I1K5N2|I1K5N2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G34820.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00714107487114550+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01876DARS, aspS EC:6.1.1.12 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0005524  ATP binding

GO:0016874  ligase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000714s00022868.1PF01336.20tRNA_anti-codon921763.60E-11
Glyur000714s00022868.1PF00152.15tRNA-synt_21996393.00E-128
Glyur000714s00022868.1PF02938.9GAD3914903.20E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.366
SRR1783600control12.559
SRR1783602moderate drought stress12.709
SRR1811619moderate drought stress13.312

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.256
DRR006520Root Summer glycyrrhizin high producing strain9.213
DRR006521Root Winter glycyrrhizin high producing strain14.952
DRR006522Root Winter glycyrrhizin high producing strain13.222
DRR006523Root Summer glycyrrhizin low producing strain9.751
DRR006524Root Summer glycyrrhizin low producing strain9.718
DRR006525Leaf Summer glycyrrhizin high producing strain23.770
DRR006526Leaf Summer glycyrrhizin high producing strain23.686

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.658
SRR2868004Drought Stress(Tissue:root)18.988
SRR2967015Control (Tissue:root)15.490

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.097
SRR9715740Leave32.037
SRR9715741Leave23.314
SRR9715739Root2.678
SRR9715742Root7.494
SRR9715743Root6.294

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.995
SRR8749028MeJA induced 9h12.669
SRR8749029MeJA induced 9h8.954
SRR8749030Uninduced7.132
SRR8749031Uninduced2.520
SRR8749032Uninduced3.152

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.644
SRR8400027Control-Root18.369

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved