Gene detail information of Glyur000714s00022869.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45220.1 | 2.00E-13 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | KEH21379.1 | 7.94E-23 | pectinesterase/pectinesterase inhibitor [Medicago truncatula] |
| COG | YP_003091437.1 | 4.00E-44 | pectinesterase [Pedobacter heparinus DSM 2366] |
| Swissprot | tr|O04887|PME2_CITSI | 4.00E-18 | Pectinesterase 2 (Precursor) |
| trEMBL | tr|A0A072TV68|A0A072TV68_MEDTR | 3.00E-23 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00714 | 118343 | 121564 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000714s00022869.1 | PF01095.14 | Pectinesterase | 1 | 38 | 7.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.028 |
| SRR1783600 | control | 0.014 |
| SRR1783602 | moderate drought stress | 0.077 |
| SRR1811619 | moderate drought stress | 0.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.255 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.243 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.010 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.028 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.859 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.134 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.741 |
| SRR2967015 | Control (Tissue:root) | 5.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.203 |
| SRR9715740 | Leave | 2.048 |
| SRR9715741 | Leave | 2.841 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.780 |
| SRR8400027 | Control-Root | 1.271 |