Gene detail information of Glyur000715s00031143.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT2G26670.1 | 2.00E-83 | Plant haem oxygenase (decyclizing) family protein |
NR | XP_004514862.1 | 5.78E-134 | PREDICTED: heme oxygenase 1, chloroplastic-like isoform X1 [Cicer arietinum] |
Swissprot | tr|O48782|HMOX1_ARATH | 2.00E-119 | Heme oxygenase 1, chloroplastic (Precursor) |
trEMBL | tr|Q93VB1|Q93VB1_PEA | 2.00E-132 | Putative heme oxygenase 1 {ECO:0000313|EMBL:AAK82969.1} (Precursor) |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00715 | 28277 | 31906 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K00510 | HMOX, hmuO, ho | EC:1.14.14.18 | Porphyrin and chlorophyll metabolism | map00860 |
Mineral absorption | map04978 | |||
Fluid shear stress and atherosclerosis | map05418 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000715s00031143.1 | PF01126.15 | Heme_oxygenase | 61 | 221 | 1.20E-11 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.040 |
SRR1783600 | control | 0.041 |
SRR1783602 | moderate drought stress | 0.036 |
SRR1811619 | moderate drought stress | 0.042 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.249 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.243 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 2.784 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 2.470 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 0.293 |
SRR2868004 | Drought Stress(Tissue:root) | 0.106 |
SRR2967015 | Control (Tissue:root) | 0.608 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.000 |
SRR9715740 | Leave | 0.000 |
SRR9715741 | Leave | 0.000 |
SRR9715739 | Root | 0.158 |
SRR9715742 | Root | 0.000 |
SRR9715743 | Root | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.367 |
SRR8749028 | MeJA induced 9h | 1.220 |
SRR8749029 | MeJA induced 9h | 0.526 |
SRR8749030 | Uninduced | 0.783 |
SRR8749031 | Uninduced | 1.743 |
SRR8749032 | Uninduced | 3.626 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 2.908 |
SRR8400027 | Control-Root | 2.280 |