Gene detail information of Glyur000715s00031150.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G24560.13.00E-140ubiquitin-specific protease 16
NRAES98232.20ubiquitin carboxy-terminal hydrolase [Medicago truncatula]
Swissprottr|Q9SB51|UBP16_ARATH2.00E-168Ubiquitin carboxyl-terminal hydrolase 16
trEMBLtr|G7KBJ7|G7KBJ7_MEDTR0Ubiquitin carboxy-terminal hydrolase {ECO:0000313|EMBL:AES98232.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007157541883771+


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000715s00031150.1PF01753.13zf-MYND971343.70E-09
Glyur000715s00031150.1PF00443.24UCH5348362.20E-48


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.532
SRR1783600control13.345
SRR1783602moderate drought stress9.922
SRR1811619moderate drought stress9.898

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.854
DRR006520Root Summer glycyrrhizin high producing strain12.490
DRR006521Root Winter glycyrrhizin high producing strain12.177
DRR006522Root Winter glycyrrhizin high producing strain11.917
DRR006523Root Summer glycyrrhizin low producing strain16.680
DRR006524Root Summer glycyrrhizin low producing strain16.721
DRR006525Leaf Summer glycyrrhizin high producing strain7.095
DRR006526Leaf Summer glycyrrhizin high producing strain7.115

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.315
SRR2868004Drought Stress(Tissue:root)13.724
SRR2967015Control (Tissue:root)13.691

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.436
SRR9715740Leave12.093
SRR9715741Leave14.281
SRR9715739Root2.957
SRR9715742Root14.071
SRR9715743Root12.415

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.672
SRR8749028MeJA induced 9h9.380
SRR8749029MeJA induced 9h9.035
SRR8749030Uninduced5.081
SRR8749031Uninduced3.665
SRR8749032Uninduced6.268

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.655
SRR8400027Control-Root14.130

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved