Gene detail information of Glyur000716s00026204.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19160.1 | 3.00E-141 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | KHN22671.1 | 0 | hypothetical protein glysoja_027559 [Glycine soja] |
| trEMBL | tr|I1MSM7|I1MSM7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G06790.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00716 | 101769 | 107631 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000716s00026204.1 | PF02485.16 | Branch | 107 | 336 | 1.10E-83 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.640 |
| SRR1783600 | control | 9.498 |
| SRR1783602 | moderate drought stress | 13.385 |
| SRR1811619 | moderate drought stress | 13.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.061 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.973 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.101 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.589 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.117 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.642 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.073 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.188 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.895 |
| SRR2967015 | Control (Tissue:root) | 18.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.298 |
| SRR9715740 | Leave | 10.645 |
| SRR9715741 | Leave | 14.244 |
| SRR9715739 | Root | 6.721 |
| SRR9715742 | Root | 15.321 |
| SRR9715743 | Root | 13.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.596 |
| SRR8749028 | MeJA induced 9h | 29.174 |
| SRR8749029 | MeJA induced 9h | 23.247 |
| SRR8749030 | Uninduced | 19.445 |
| SRR8749031 | Uninduced | 23.095 |
| SRR8749032 | Uninduced | 17.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.110 |
| SRR8400027 | Control-Root | 19.510 |