Gene detail information of Glyur000718s00020276.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39360.1 | 7.00E-122 | EID1-like 2 |
| NR | XP_008230841.1 | 1.03E-169 | PREDICTED: EID1-like F-box protein 2 [Prunus mume] |
| Swissprot | tr|Q9FLZ8|EDL2_ARATH | 5.00E-154 | EID1-like F-box protein 2 |
| trEMBL | tr|M5XD98|M5XD98_PRUPE | 5.00E-170 | Uncharacterized protein {ECO:0000313|EMBL:EMJ17060.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00718 | 23714 | 24460 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.021 |
| SRR1783600 | control | 11.876 |
| SRR1783602 | moderate drought stress | 14.776 |
| SRR1811619 | moderate drought stress | 14.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.229 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.003 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.204 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.151 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.626 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.046 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.933 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.262 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.806 |
| SRR2967015 | Control (Tissue:root) | 13.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.752 |
| SRR9715740 | Leave | 12.081 |
| SRR9715741 | Leave | 14.422 |
| SRR9715739 | Root | 9.056 |
| SRR9715742 | Root | 12.566 |
| SRR9715743 | Root | 14.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.423 |
| SRR8749028 | MeJA induced 9h | 8.888 |
| SRR8749029 | MeJA induced 9h | 7.985 |
| SRR8749030 | Uninduced | 6.222 |
| SRR8749031 | Uninduced | 3.876 |
| SRR8749032 | Uninduced | 4.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.193 |
| SRR8400027 | Control-Root | 16.652 |