Gene detail information of Glyur000718s00020278.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19520.1 | 0 | Transducin family protein / WD-40 repeat family protein |
| NR | XP_003543596.1 | 0 | PREDICTED: WD-40 repeat-containing protein MSI4-like isoform X1 [Glycine max] |
| COG | YP_007092635.1 | 1.00E-10 | WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203] |
| Swissprot | tr|O22607|MSI4_ARATH | 0 | WD-40 repeat-containing protein MSI4 |
| trEMBL | tr|K7M3N4|K7M3N4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G42660.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00718 | 35575 | 40513 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000718s00020278.1 | PF12265.3 | CAF1C_H4-bd | 12 | 81 | 5.20E-20 |
| Glyur000718s00020278.1 | PF00400.27 | WD40 | 234 | 269 | 0.00014 |
| Glyur000718s00020278.1 | PF00400.27 | WD40 | 278 | 314 | 7.20E-07 |
| Glyur000718s00020278.1 | PF00400.27 | WD40 | 325 | 363 | 3.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.223 |
| SRR1783600 | control | 12.147 |
| SRR1783602 | moderate drought stress | 7.963 |
| SRR1811619 | moderate drought stress | 8.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.012 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.625 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.774 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.140 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.051 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.102 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.192 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.239 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.286 |
| SRR2967015 | Control (Tissue:root) | 6.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.038 |
| SRR9715740 | Leave | 1.322 |
| SRR9715741 | Leave | 1.568 |
| SRR9715739 | Root | 5.896 |
| SRR9715742 | Root | 6.191 |
| SRR9715743 | Root | 4.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.738 |
| SRR8749028 | MeJA induced 9h | 13.099 |
| SRR8749029 | MeJA induced 9h | 12.145 |
| SRR8749030 | Uninduced | 3.098 |
| SRR8749031 | Uninduced | 1.562 |
| SRR8749032 | Uninduced | 1.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.587 |
| SRR8400027 | Control-Root | 17.219 |