Gene detail information of Glyur000718s00020280.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G13750.10beta galactosidase 1
NRXP_004486826.10PREDICTED: beta-galactosidase 1-like [Cicer arietinum]
COGYP_003380010.13.00E-46beta-galactosidase [Kribbella flavida DSM 17836]
Swissprottr|Q9SCW1|BGAL1_ARATH0Beta-galactosidase 1 (Precursor)
trEMBLtr|A2Q448|A2Q448_MEDTR0Beta-galactosidase {ECO:0000256|RuleBase:RU000675}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007185006757118-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH35


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0030246  carbohydrate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000718s00020280.2PF01301.14Glyco_hydro_35413403.20E-113
Glyur000718s00020280.2PF02140.13Gal_Lectin7608375.10E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.863
SRR1783600control26.052
SRR1783602moderate drought stress31.443
SRR1811619moderate drought stress31.178

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.698
DRR006520Root Summer glycyrrhizin high producing strain17.731
DRR006521Root Winter glycyrrhizin high producing strain1.173
DRR006522Root Winter glycyrrhizin high producing strain1.159
DRR006523Root Summer glycyrrhizin low producing strain8.520
DRR006524Root Summer glycyrrhizin low producing strain8.598
DRR006525Leaf Summer glycyrrhizin high producing strain18.111
DRR006526Leaf Summer glycyrrhizin high producing strain18.203

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)42.868
SRR2868004Drought Stress(Tissue:root)80.198
SRR2967015Control (Tissue:root)223.279

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave38.100
SRR9715740Leave34.681
SRR9715741Leave11.218
SRR9715739Root15.157
SRR9715742Root26.627
SRR9715743Root23.835

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.356
SRR8749028MeJA induced 9h6.959
SRR8749029MeJA induced 9h1.789
SRR8749030Uninduced5.475
SRR8749031Uninduced0.108
SRR8749032Uninduced0.181

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.784
SRR8400027Control-Root36.338

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved