Gene detail information of Glyur000718s00020284.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55150.10DEA(D/H)-box RNA helicase family protein
NRXP_004486821.10PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like isoform X2 [Cicer arietinum]
COGYP_565003.13.00E-96DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM 6242]
Swissprottr|Q9C718|RH20_ARATH0DEAD-box ATP-dependent RNA helicase 20
trEMBLtr|A2Q465|A2Q465_MEDTR0Helicase, C-terminal {ECO:0000313|EMBL:ABN08415.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0071899928104430+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12823DDX5, DBP2 EC:3.6.4.13 Spliceosome map03040
Transcriptional misregulation in cancersmap05202
Proteoglycans in cancermap05205


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000718s00020284.1PF00270.24DEAD1222931.50E-44
Glyur000718s00020284.1PF00271.26Helicase_C3624382.10E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.785
SRR1783600control15.790
SRR1783602moderate drought stress19.151
SRR1811619moderate drought stress19.058

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.946
DRR006520Root Summer glycyrrhizin high producing strain27.567
DRR006521Root Winter glycyrrhizin high producing strain35.854
DRR006522Root Winter glycyrrhizin high producing strain34.981
DRR006523Root Summer glycyrrhizin low producing strain33.187
DRR006524Root Summer glycyrrhizin low producing strain32.908
DRR006525Leaf Summer glycyrrhizin high producing strain19.928
DRR006526Leaf Summer glycyrrhizin high producing strain20.284

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.513
SRR2868004Drought Stress(Tissue:root)40.294
SRR2967015Control (Tissue:root)43.293

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave29.301
SRR9715740Leave33.568
SRR9715741Leave33.825
SRR9715739Root22.999
SRR9715742Root32.617
SRR9715743Root26.775

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h44.834
SRR8749028MeJA induced 9h40.842
SRR8749029MeJA induced 9h32.927
SRR8749030Uninduced25.307
SRR8749031Uninduced7.278
SRR8749032Uninduced17.662

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.144
SRR8400027Control-Root32.796

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved