Gene detail information of Glyur000719s00020085.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G64330.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_003608415.1 | 0 | Root phototropism protein [Medicago truncatula] |
| Swissprot | tr|Q9FMF5|RPT3_ARATH | 0 | Root phototropism protein 3 |
| trEMBL | tr|G7JV64|G7JV64_MEDTR | 0 | Phototropic-responsive NPH3 family protein {ECO:0000313|EMBL:AES90612.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00719 | 14399 | 18004 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000719s00020085.1 | PF03000.9 | NPH3 | 259 | 551 | 1.40E-95 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.478 |
| SRR1783600 | control | 8.471 |
| SRR1783602 | moderate drought stress | 11.628 |
| SRR1811619 | moderate drought stress | 11.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.077 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.896 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.407 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.401 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.233 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.736 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.392 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.537 |
| SRR2868004 | Drought Stress(Tissue:root) | 23.364 |
| SRR2967015 | Control (Tissue:root) | 30.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.407 |
| SRR9715740 | Leave | 4.904 |
| SRR9715741 | Leave | 7.083 |
| SRR9715739 | Root | 2.097 |
| SRR9715742 | Root | 12.651 |
| SRR9715743 | Root | 9.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.815 |
| SRR8749028 | MeJA induced 9h | 0.122 |
| SRR8749029 | MeJA induced 9h | 0.652 |
| SRR8749030 | Uninduced | 0.123 |
| SRR8749031 | Uninduced | 0.097 |
| SRR8749032 | Uninduced | 0.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.492 |
| SRR8400027 | Control-Root | 22.287 |