Gene detail information of Glyur000719s00020091.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G72220.14.00E-40RING/U-box superfamily protein
NRXP_003608413.12.78E-126RING-H2 finger protein ATL1O [Medicago truncatula]
Swissprottr|Q8LFY8|ATL54_ARATH2.00E-46RING-H2 finger protein ATL54
trEMBLtr|G7JV62|G7JV62_MEDTR1.00E-126RING-H2 zinc finger protein {ECO:0000313|EMBL:AES90610.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007193319434291+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000719s00020091.1PF13639.1zf-RING_21451883.00E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control43.042
SRR1783600control43.710
SRR1783602moderate drought stress69.377
SRR1811619moderate drought stress69.326

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain80.762
DRR006520Root Summer glycyrrhizin high producing strain68.202
DRR006521Root Winter glycyrrhizin high producing strain127.948
DRR006522Root Winter glycyrrhizin high producing strain103.148
DRR006523Root Summer glycyrrhizin low producing strain177.511
DRR006524Root Summer glycyrrhizin low producing strain177.942
DRR006525Leaf Summer glycyrrhizin high producing strain8.812
DRR006526Leaf Summer glycyrrhizin high producing strain8.211

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)40.310
SRR2868004Drought Stress(Tissue:root)68.678
SRR2967015Control (Tissue:root)95.289

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave55.073
SRR9715740Leave52.285
SRR9715741Leave69.548
SRR9715739Root123.051
SRR9715742Root73.672
SRR9715743Root88.243

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h101.369
SRR8749028MeJA induced 9h100.286
SRR8749029MeJA induced 9h88.152
SRR8749030Uninduced94.011
SRR8749031Uninduced131.257
SRR8749032Uninduced135.812

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.381
SRR8400027Control-Root42.505

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved