Gene detail information of Glyur000719s00020093.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G64300.10GTP cyclohydrolase II
NRXP_004504823.10PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Cicer arietinum]
COGYP_003709448.12.00E-1763,4-dihydroxy-2-butanone 4-phosphate synthase [Waddlia chondrophila WSU 86-1044]
Swissprottr|P47924|RIBA1_ARATH0GTP cyclohydrolase-2 (Precursor)
trEMBLtr|K7L5C2|K7L5C2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G07501.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007194257147689-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14652ribBA EC:4.1.99.12 3.5.4.25 Riboflavin metabolism map00740


Gene Ontology

biological_process

GO:0009231  riboflavin biosynthetic process


molecular_function

GO:0003935  GTP cyclohydrolase II activity

GO:0008686  3,4-dihydroxy-2-butanone-4-phosphate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000719s00020093.1PF00926.14DHBP_synthase1273228.00E-82
Glyur000719s00020093.1PF00925.15GTP_cyclohydro23294982.70E-73


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.790
SRR1783600control7.743
SRR1783602moderate drought stress6.445
SRR1811619moderate drought stress6.568

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.858
DRR006520Root Summer glycyrrhizin high producing strain11.847
DRR006521Root Winter glycyrrhizin high producing strain5.250
DRR006522Root Winter glycyrrhizin high producing strain5.192
DRR006523Root Summer glycyrrhizin low producing strain11.063
DRR006524Root Summer glycyrrhizin low producing strain10.900
DRR006525Leaf Summer glycyrrhizin high producing strain19.282
DRR006526Leaf Summer glycyrrhizin high producing strain19.401

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.737
SRR2868004Drought Stress(Tissue:root)12.430
SRR2967015Control (Tissue:root)12.502

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.677
SRR9715740Leave19.714
SRR9715741Leave17.285
SRR9715739Root3.658
SRR9715742Root14.440
SRR9715743Root15.149

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.630
SRR8749028MeJA induced 9h14.751
SRR8749029MeJA induced 9h17.765
SRR8749030Uninduced15.756
SRR8749031Uninduced18.109
SRR8749032Uninduced13.222

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.179
SRR8400027Control-Root18.915

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved