Gene detail information of Glyur000719s00020107.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G60220.1 | 7.00E-14 | TOXICOS EN LEVADURA 4 |
| NR | XP_003530107.1 | 1.36E-73 | PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Glycine max] |
| Swissprot | tr|Q9LY41|ATL4_ARATH | 3.00E-30 | E3 ubiquitin-protein ligase ATL4 |
| trEMBL | tr|K7L126|K7L126_SOYBN | 5.00E-74 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G12990.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00719 | 125152 | 125850 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000719s00020107.1 | PF13639.1 | zf-RING_2 | 129 | 169 | 4.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.571 |
| SRR1783600 | control | 0.624 |
| SRR1783602 | moderate drought stress | 0.217 |
| SRR1811619 | moderate drought stress | 0.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.036 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.075 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.074 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.325 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.779 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.610 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.444 |
| SRR2967015 | Control (Tissue:root) | 0.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.143 |
| SRR9715740 | Leave | 0.071 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.335 |
| SRR9715742 | Root | 0.251 |
| SRR9715743 | Root | 0.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.065 |
| SRR8749028 | MeJA induced 9h | 2.704 |
| SRR8749029 | MeJA induced 9h | 5.073 |
| SRR8749030 | Uninduced | 1.780 |
| SRR8749031 | Uninduced | 0.319 |
| SRR8749032 | Uninduced | 3.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.750 |
| SRR8400027 | Control-Root | 0.419 |