Gene detail information of Glyur000720s00020684.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G26742.10DEAD box RNA helicase (RH3)
NRXP_007145071.10hypothetical protein PHAVU_007G207200g [Phaseolus vulgaris]
COGYP_004056955.12.00E-115ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
Swissprottr|Q8L7S8|RH3_ARATH0DEAD-box ATP-dependent RNA helicase 3, chloroplastic (Precursor)
trEMBLtr|V7BHS0|V7BHS0_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW17065.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00720855515071+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005634  nucleus


molecular_function

GO:0003676  nucleic acid binding

GO:0003723  RNA binding

GO:0004386  helicase activity

GO:0005524  ATP binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000720s00020684.1PF00270.24DEAD1303011.00E-44
Glyur000720s00020684.1PF00271.26Helicase_C3764462.60E-25
Glyur000720s00020684.1PF08152.7GUCT5336348.40E-20
Glyur000720s00020684.1PF00098.18zf-CCHC7267411.20E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.483
SRR1783600control5.444
SRR1783602moderate drought stress5.686
SRR1811619moderate drought stress5.656

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.927
DRR006520Root Summer glycyrrhizin high producing strain4.923
DRR006521Root Winter glycyrrhizin high producing strain2.082
DRR006522Root Winter glycyrrhizin high producing strain2.001
DRR006523Root Summer glycyrrhizin low producing strain9.128
DRR006524Root Summer glycyrrhizin low producing strain9.042
DRR006525Leaf Summer glycyrrhizin high producing strain6.390
DRR006526Leaf Summer glycyrrhizin high producing strain6.342

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.315
SRR2868004Drought Stress(Tissue:root)2.658
SRR2967015Control (Tissue:root)3.235

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.839
SRR9715740Leave2.758
SRR9715741Leave3.639
SRR9715739Root2.578
SRR9715742Root4.099
SRR9715743Root3.934

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.212
SRR8749028MeJA induced 9h8.081
SRR8749029MeJA induced 9h9.017
SRR8749030Uninduced1.349
SRR8749031Uninduced1.208
SRR8749032Uninduced1.160

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.987
SRR8400027Control-Root3.649

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved