Gene detail information of Glyur000722s00018843.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16210.1 | 1.00E-06 | F-box family protein |
| NR | XP_004486116.1 | 1.50E-72 | PREDICTED: putative F-box protein At3g17480-like [Cicer arietinum] |
| Swissprot | tr|Q9LU24|FB145_ARATH | 3.00E-07 | Putative F-box protein At3g16210 |
| trEMBL | tr|I1M158|I1M158_SOYBN | 3.00E-70 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G28060.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00722 | 50922 | 51473 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000722s00018843.1 | PF12937.2 | F-box-like | 26 | 66 | 4.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.703 |
| SRR1783600 | control | 7.566 |
| SRR1783602 | moderate drought stress | 6.969 |
| SRR1811619 | moderate drought stress | 7.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.377 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.821 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.267 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.688 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.874 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.108 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.599 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 37.290 |
| SRR2868004 | Drought Stress(Tissue:root) | 43.764 |
| SRR2967015 | Control (Tissue:root) | 38.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.770 |
| SRR9715740 | Leave | 22.635 |
| SRR9715741 | Leave | 22.992 |
| SRR9715739 | Root | 18.292 |
| SRR9715742 | Root | 12.544 |
| SRR9715743 | Root | 14.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 55.100 |
| SRR8749028 | MeJA induced 9h | 44.420 |
| SRR8749029 | MeJA induced 9h | 33.443 |
| SRR8749030 | Uninduced | 25.443 |
| SRR8749031 | Uninduced | 22.056 |
| SRR8749032 | Uninduced | 36.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 37.333 |
| SRR8400027 | Control-Root | 35.137 |