Gene detail information of Glyur000722s00018855.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23880.1 | 2.00E-35 | F-box and associated interaction domains-containing protein |
| NR | XP_004486107.1 | 7.69E-141 | PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] |
| Swissprot | tr|Q9LIR8|FBK67_ARATH | 2.00E-39 | F-box/kelch-repeat protein At3g23880 |
| trEMBL | tr|I1MFB8|I1MFB8_SOYBN | 3.00E-126 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G10860.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00722 | 124353 | 125600 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000722s00018855.1 | PF00646.28 | F-box | 51 | 96 | 1.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.434 |
| SRR1783600 | control | 5.161 |
| SRR1783602 | moderate drought stress | 7.645 |
| SRR1811619 | moderate drought stress | 7.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.578 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.962 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.643 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.841 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.438 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.891 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.416 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.387 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.294 |
| SRR2967015 | Control (Tissue:root) | 4.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.598 |
| SRR9715740 | Leave | 5.709 |
| SRR9715741 | Leave | 3.703 |
| SRR9715739 | Root | 7.802 |
| SRR9715742 | Root | 3.994 |
| SRR9715743 | Root | 4.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.453 |
| SRR8749028 | MeJA induced 9h | 8.651 |
| SRR8749029 | MeJA induced 9h | 5.509 |
| SRR8749030 | Uninduced | 5.366 |
| SRR8749031 | Uninduced | 3.719 |
| SRR8749032 | Uninduced | 5.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.148 |
| SRR8400027 | Control-Root | 4.388 |