Gene detail information of Glyur000723s00020862.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74700.1 | 3.00E-125 | tRNAse Z1 |
| NR | XP_007153186.1 | 0 | hypothetical protein PHAVU_003G014100g [Phaseolus vulgaris] |
| COG | YP_007202617.1 | 4.00E-56 | beta-lactamase superfamily metal-dependent hydrolase [Singulisphaera acidiphila DSM 18658] |
| Swissprot | tr|Q8LGU7|RNZN_ARATH | 3.00E-157 | Nuclear ribonuclease Z |
| trEMBL | tr|V7C8G3|V7C8G3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW25181.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00723 | 8110 | 12535 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00784 | rnz | EC:3.1.26.11 | RNA transport | map03013 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000723s00020862.1 | PF12706.2 | Lactamase_B_2 | 66 | 269 | 3.20E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.671 |
| SRR1783600 | control | 3.639 |
| SRR1783602 | moderate drought stress | 3.276 |
| SRR1811619 | moderate drought stress | 3.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.292 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.981 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.809 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.862 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.009 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.920 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.008 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.683 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.596 |
| SRR2967015 | Control (Tissue:root) | 6.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.416 |
| SRR9715740 | Leave | 6.105 |
| SRR9715741 | Leave | 5.239 |
| SRR9715739 | Root | 2.029 |
| SRR9715742 | Root | 3.800 |
| SRR9715743 | Root | 3.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.861 |
| SRR8749028 | MeJA induced 9h | 1.634 |
| SRR8749029 | MeJA induced 9h | 3.038 |
| SRR8749030 | Uninduced | 0.903 |
| SRR8749031 | Uninduced | 0.219 |
| SRR8749032 | Uninduced | 0.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.264 |
| SRR8400027 | Control-Root | 5.646 |