Gene detail information of Glyur000724s00029520.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48300.1 | 4.00E-14 | ADP glucose pyrophosphorylase 1 |
| NR | AAK11298.1 | 1.92E-14 | ADP-glucose pyrophosphorylase small subunit [Amorphophallus albus] |
| COG | YP_007168511.1 | 6.00E-08 | glucose-1-phosphate adenylyltransferase [Halothece sp. PCC 7418] |
| Swissprot | tr|P55232|GLGS_BETVU | 3.00E-16 | Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Precursor; Fragment) |
| trEMBL | tr|Q9AQZ7|Q9AQZ7_AMOAL | 7.00E-15 | Glucose-1-phosphate adenylyltransferase {ECO:0000256|RuleBase:RU003565} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00724 | 42000 | 48716 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00975 | glgC | EC:2.7.7.27 | Starch and sucrose metabolism | map00500 |
| Amino sugar and nucleotide sugar metabolism | map00520 | |||
| Biofilm formation - Escherichia coli | map02026 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.019 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.031 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.272 |
| SRR2967015 | Control (Tissue:root) | 0.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.011 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.011 |
| SRR9715739 | Root | 0.001 |
| SRR9715742 | Root | 0.109 |
| SRR9715743 | Root | 0.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.875 |
| SRR8749028 | MeJA induced 9h | 1.218 |
| SRR8749029 | MeJA induced 9h | 0.180 |
| SRR8749030 | Uninduced | 0.768 |
| SRR8749031 | Uninduced | 0.376 |
| SRR8749032 | Uninduced | 0.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.037 |