Gene detail information of Glyur000731s00024682.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G05160.10AMP-dependent synthetase and ligase family protein
NRKEH39397.104-coumarate:CoA ligase-like protein [Medicago truncatula]
COGYP_003291469.12.00E-133AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252]
Swissprottr|Q9M0X9|4CLL7_ARATH04-coumarate--CoA ligase-like 7
trEMBLtr|A0A072VCC0|A0A072VCC0_MEDTR04-coumarate:CoA ligase-like protein {ECO:0000313|EMBL:KEH39397.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007317083376487-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K019044CL EC:6.2.1.12 Phenylalanine metabolism map00360
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000731s00024682.1PF00501.23AMP-binding354379.50E-99
Glyur000731s00024682.1PF13193.1AMP-binding_C4465211.10E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.732
SRR1783600control18.659
SRR1783602moderate drought stress17.930
SRR1811619moderate drought stress17.382

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.688
DRR006520Root Summer glycyrrhizin high producing strain5.709
DRR006521Root Winter glycyrrhizin high producing strain4.472
DRR006522Root Winter glycyrrhizin high producing strain4.511
DRR006523Root Summer glycyrrhizin low producing strain9.800
DRR006524Root Summer glycyrrhizin low producing strain9.621
DRR006525Leaf Summer glycyrrhizin high producing strain10.715
DRR006526Leaf Summer glycyrrhizin high producing strain10.902

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)90.167
SRR2868004Drought Stress(Tissue:root)108.022
SRR2967015Control (Tissue:root)102.149

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave72.054
SRR9715740Leave18.821
SRR9715741Leave91.117
SRR9715739Root5.783
SRR9715742Root29.087
SRR9715743Root22.636

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.454
SRR8749028MeJA induced 9h74.237
SRR8749029MeJA induced 9h39.000
SRR8749030Uninduced93.138
SRR8749031Uninduced48.041
SRR8749032Uninduced54.555

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.389
SRR8400027Control-Root17.124

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved