Gene detail information of Glyur000731s00024686.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28100.1 | 1.00E-171 | alpha-L-fucosidase 1 |
| NR | XP_004487063.1 | 0 | PREDICTED: alpha-L-fucosidase 1-like [Cicer arietinum] |
| COG | YP_003385171.1 | 3.00E-133 | alpha-L-fucosidase [Spirosoma linguale DSM 74] |
| Swissprot | tr|Q8GW72|FUCO1_ARATH | 0 | Alpha-L-fucosidase 1 (Precursor) |
| trEMBL | tr|G7IU62|G7IU62_MEDTR | 0 | Alpha-L-fucosidase-like protein {ECO:0000313|EMBL:AES67518.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00731 | 102069 | 106306 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH29 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01206 | FUCA | EC:3.2.1.51 | Other glycan degradation | map00511 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000731s00024686.1 | PF01120.12 | Alpha_L_fucos | 90 | 355 | 5.00E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.718 |
| SRR1783600 | control | 8.552 |
| SRR1783602 | moderate drought stress | 7.129 |
| SRR1811619 | moderate drought stress | 7.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.110 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.989 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.310 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.113 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.697 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.228 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.677 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.443 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.376 |
| SRR2967015 | Control (Tissue:root) | 8.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.603 |
| SRR9715740 | Leave | 4.892 |
| SRR9715741 | Leave | 4.500 |
| SRR9715739 | Root | 5.713 |
| SRR9715742 | Root | 4.598 |
| SRR9715743 | Root | 5.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.660 |
| SRR8749028 | MeJA induced 9h | 8.133 |
| SRR8749029 | MeJA induced 9h | 2.800 |
| SRR8749030 | Uninduced | 3.828 |
| SRR8749031 | Uninduced | 1.736 |
| SRR8749032 | Uninduced | 1.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.034 |
| SRR8400027 | Control-Root | 9.355 |