Gene detail information of Glyur000734s00026316.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G20680.17.00E-180Glycosyl hydrolase superfamily protein
NRAFK46805.10unknown [Lotus japonicus]
COGYP_003324408.17.00E-66glycoside hydrolase family protein [Thermobaculum terrenum ATCC BAA-798]
Swissprottr|Q7Y223|MAN2_ARATH0Mannan endo-1,4-beta-mannosidase 2 (Precursor)
trEMBLtr|I3T2R3|I3T2R3_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK46805.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007344474749894+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH5


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19355MAN EC:3.2.1.78 Fructose and mannose metabolism map00051


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000734s00026316.1PF00150.13Cellulase773766.70E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.313
SRR1783600control18.419
SRR1783602moderate drought stress9.717
SRR1811619moderate drought stress9.770

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.994
DRR006520Root Summer glycyrrhizin high producing strain11.743
DRR006521Root Winter glycyrrhizin high producing strain13.915
DRR006522Root Winter glycyrrhizin high producing strain13.591
DRR006523Root Summer glycyrrhizin low producing strain8.660
DRR006524Root Summer glycyrrhizin low producing strain8.681
DRR006525Leaf Summer glycyrrhizin high producing strain3.035
DRR006526Leaf Summer glycyrrhizin high producing strain3.031

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.254
SRR2868004Drought Stress(Tissue:root)16.319
SRR2967015Control (Tissue:root)16.594

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.944
SRR9715740Leave1.073
SRR9715741Leave1.760
SRR9715739Root3.411
SRR9715742Root9.061
SRR9715743Root8.754

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h85.243
SRR8749028MeJA induced 9h88.796
SRR8749029MeJA induced 9h70.130
SRR8749030Uninduced33.676
SRR8749031Uninduced38.101
SRR8749032Uninduced23.683

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.186
SRR8400027Control-Root22.256

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved