Gene detail information of Glyur000734s00026329.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G20690.19.00E-88lumazine-binding family protein
NRXP_004506614.12.08E-134PREDICTED: riboflavin synthase-like [Cicer arietinum]
COGYP_002463945.13.00E-73riboflavin synthase subunit alpha [Chloroflexus aggregans DSM 9485]
trEMBLtr|V7AHF1|V7AHF1_PHAVU4.00E-134Uncharacterized protein {ECO:0000313|EMBL:ESW04655.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007348176282598+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00793ribE, RIB5 EC:2.5.1.9 Riboflavin metabolism map00740


Gene Ontology

biological_process

GO:0009231  riboflavin biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004746  riboflavin synthase activity

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000734s00026329.1PF00677.12Lum_binding721583.20E-16
Glyur000734s00026329.1PF00677.12Lum_binding1712572.10E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control48.858
SRR1783600control47.966
SRR1783602moderate drought stress49.037
SRR1811619moderate drought stress48.455

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain50.205
DRR006520Root Summer glycyrrhizin high producing strain49.513
DRR006521Root Winter glycyrrhizin high producing strain18.426
DRR006522Root Winter glycyrrhizin high producing strain17.808
DRR006523Root Summer glycyrrhizin low producing strain65.144
DRR006524Root Summer glycyrrhizin low producing strain66.097
DRR006525Leaf Summer glycyrrhizin high producing strain84.911
DRR006526Leaf Summer glycyrrhizin high producing strain85.733

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)104.995
SRR2868004Drought Stress(Tissue:root)75.791
SRR2967015Control (Tissue:root)71.108

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave98.632
SRR9715740Leave59.489
SRR9715741Leave73.274
SRR9715739Root127.397
SRR9715742Root84.182
SRR9715743Root85.181

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h70.472
SRR8749028MeJA induced 9h40.674
SRR8749029MeJA induced 9h67.981
SRR8749030Uninduced41.646
SRR8749031Uninduced25.406
SRR8749032Uninduced29.627

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root69.348
SRR8400027Control-Root63.147

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved