Gene detail information of Glyur000734s00026336.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT4G03510.2 | 2.00E-35 | RING membrane-anchor 1 |
NR | KEH19655.1 | 6.53E-90 | E3 ubiquitin-protein ligase RMA1H1-like protein [Medicago truncatula] |
Swissprot | tr|Q6R567|RMA1_CAPAN | 1.00E-51 | E3 ubiquitin-protein ligase RMA1H1 |
trEMBL | tr|A0A072U1G6|A0A072U1G6_MEDTR | 2.00E-90 | E3 ubiquitin-protein ligase RMA1H1-like protein {ECO:0000313|EMBL:KEH19655.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00734 | 118380 | 119251 | + |
Gene family
Gene family | subfamily |
---|---|
Ubiquitin Family | RING |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K10666 | RNF5 | EC:2.3.2.27 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000734s00026336.1 | PF13923.1 | zf-C3HC4_2 | 35 | 83 | 6.10E-09 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 11.198 |
SRR1783600 | control | 11.612 |
SRR1783602 | moderate drought stress | 47.977 |
SRR1811619 | moderate drought stress | 46.819 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 24.189 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 24.233 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 13.663 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 12.282 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 27.218 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 26.943 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.644 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 42.612 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 15.175 |
SRR2868004 | Drought Stress(Tissue:root) | 44.148 |
SRR2967015 | Control (Tissue:root) | 81.487 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 28.285 |
SRR9715740 | Leave | 43.364 |
SRR9715741 | Leave | 48.256 |
SRR9715739 | Root | 4.839 |
SRR9715742 | Root | 10.722 |
SRR9715743 | Root | 9.349 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 9.113 |
SRR8749028 | MeJA induced 9h | 19.426 |
SRR8749029 | MeJA induced 9h | 13.403 |
SRR8749030 | Uninduced | 8.040 |
SRR8749031 | Uninduced | 28.957 |
SRR8749032 | Uninduced | 18.764 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 10.530 |
SRR8400027 | Control-Root | 8.858 |