Gene detail

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Gene detail information of Glyur000740s00028689.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19380.1	2.00E-141	plant U-box 25
NR	XP_004505237.1	0	PREDICTED: U-box domain-containing protein 26-like [Cicer arietinum]
COG	YP_001957949.1	1.00E-11	hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9LT79\|PUB25_ARATH	0	U-box domain-containing protein 25
trEMBL	tr\|I1JE03\|I1JE03_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G11480.1}

Sequence

Transcript Sequence

>Glyur000740s00028689.1
ATGCGTGGCAGTTTAGAACCGTTGGATTTGGGGGTTCAGATTCCCTACCACTTCAGGTGCCCAATCTCGCTTGAGCTCATGCGAGACCCGGTGACGGTTTGCACCGGTCAAACCTACGACCGAGGCAGCATCGAGTCGTGGGTGAACACCGGTAACACCACGTGCCCCGTCACGCGAGCCCCTCTCACCGACTTCACCCTTATCCCAAACCACACCCTTCGCCGNCTCATCCAAGAGTGGTGCGTCGCCAACCGCGCTTTTGGCGTCGAGCGTATCCCCACTCCCAAACAGCCCGCAGACCCTTCCCTCGTTCGCTCCTTGCTCAACCACTCTTCCTCTGATTCCGCACCCACTCAGCTCCGTCTCAACTCGCTCCGTCGACTCAGAGCACTCGCCCGCGACTCAGACTACAACCGCTCTCTCATTGCCTCTCACAACGCCCGCCGCATCCTGCTCCCCATCCTCTTCGACCACCGCGCTCCCGACGAGTTGAGTCACGAGTCACTCGCTCTACTCGTTCTCTTCCCACTCAGCGAGTCAGAATGCGCTTCCCTCGCCTCCGATTCGGACAAGATTAACTTCCTCTCGCGTCTCCTCTCCCACTCTTCCTTTGATGTCAGGGTTAACTCGGCCGCGCTCATCGAGACCGTCGTCGCCGGGACTCACTTGCCGGAGCTCCGGGCTCAGGTGAGCAGCGTCGAGGGGATCCACGACGGCGTCGTTGAGATACTAAGGAACCCGATCTCGTACCCGCGTGCGCTCAAGGTAGGGATCAAGGCCTTGTTCGCGCTCTGCCTGGTGAAGCAGACGCGGCAACGGGCGGTTGCCACCGGAGCGCCGGCGGTGCTCGTCGACAGGCTCGCGGACTTCGAGAAGTGCGACGCGGAGAGGGCGCTTGCAACGGTGGAGCTCCTGTGCCGGATTCCGGCGGGTTGCGCGGCGTTCGCCGGCCACGCGCTCACGGTACCGATGCTGGTGAAGATTATACTTAAGATATCGGATCGTGCGACGGAGTACGCCGCCGGGGCGCTGCTGTCGTTGTGCTCGGAGTCGGAGCGGTGCCAGAGGGAGGCGGTGGCGGCGGGGGTGCTGACTCAGCTTCTTCTTCTGGTACAGAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAACTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTCAAGATTCTATCGGAAATTCTGACGATTTTGCATGCAGCCAACTTGTGGTGGTGCCCTTTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00740	26714	27961	+

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function GO:0004842 ubiquitin-protein transferase activity GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000740s00028689.1	PF04564.10	U-box	14	85	1.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.359
SRR1783600	control	6.326
SRR1783602	moderate drought stress	7.355
SRR1811619	moderate drought stress	7.345

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.714
DRR006520	Root Summer glycyrrhizin high producing strain	6.747
DRR006521	Root Winter glycyrrhizin high producing strain	4.210
DRR006522	Root Winter glycyrrhizin high producing strain	4.151
DRR006523	Root Summer glycyrrhizin low producing strain	32.735
DRR006524	Root Summer glycyrrhizin low producing strain	32.556
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.165
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.105

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	11.894
SRR2868004	Drought Stress(Tissue:root)	18.140
SRR2967015	Control (Tissue:root)	21.649

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	45.388
SRR9715740	Leave	24.512
SRR9715741	Leave	32.245
SRR9715739	Root	80.367
SRR9715742	Root	59.319
SRR9715743	Root	60.362

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.477
SRR8749028	MeJA induced 9h	27.388
SRR8749029	MeJA induced 9h	29.358
SRR8749030	Uninduced	6.177
SRR8749031	Uninduced	1.008
SRR8749032	Uninduced	6.476

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	15.158
SRR8400027	Control-Root	21.410