Gene detail information of Glyur000740s00028693.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34050.1 | 3.00E-132 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | XP_004505242.1 | 3.16E-179 | PREDICTED: caffeoyl-CoA O-methyltransferase-like [Cicer arietinum] |
| COG | YP_007108508.1 | 5.00E-59 | O-methyltransferase family protein [Geitlerinema sp. PCC 7407] |
| Swissprot | tr|Q40313|CAMT_MEDSA | 5.00E-179 | Caffeoyl-CoA O-methyltransferase |
| trEMBL | tr|V9I5Z4|V9I5Z4_9FABA | 1.00E-178 | Cinnamoyl-CoA O-methyltransferase {ECO:0000313|EMBL:AEV93479.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00740 | 48710 | 50672 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00588 | E2.1.1.104 | EC:2.1.1.104 | Phenylalanine metabolism | map00360 |
| Phenylpropanoid biosynthesis | map00940 | |||
| Stilbenoid, diarylheptanoid and gingerol biosynthesis | map00945 | |||
| Flavonoid biosynthesis | map00941 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000740s00028693.1 | PF01596.12 | Methyltransf_3 | 35 | 246 | 7.70E-90 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 119.977 |
| SRR1783600 | control | 120.305 |
| SRR1783602 | moderate drought stress | 85.062 |
| SRR1811619 | moderate drought stress | 84.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 101.417 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 100.528 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.131 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.066 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 128.432 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 129.112 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 59.844 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 59.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 748.602 |
| SRR2868004 | Drought Stress(Tissue:root) | 607.454 |
| SRR2967015 | Control (Tissue:root) | 496.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 433.583 |
| SRR9715740 | Leave | 348.827 |
| SRR9715741 | Leave | 526.346 |
| SRR9715739 | Root | 75.844 |
| SRR9715742 | Root | 169.993 |
| SRR9715743 | Root | 147.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 609.440 |
| SRR8749028 | MeJA induced 9h | 791.481 |
| SRR8749029 | MeJA induced 9h | 530.209 |
| SRR8749030 | Uninduced | 961.508 |
| SRR8749031 | Uninduced | 380.474 |
| SRR8749032 | Uninduced | 651.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 478.210 |
| SRR8400027 | Control-Root | 287.745 |