Gene detail

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Gene detail information of Glyur000740s00028697.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G34100.1	RING/U-box superfamily protein
NR	XP_004505248.1	PREDICTED: E3 ubiquitin-protein ligase MARCH6-like isoform X3 [Cicer arietinum]
Swissprot	tr\|F4JKK0\|SUD1_ARATH	Probable E3 ubiquitin ligase SUD1
trEMBL	tr\|I1JE11\|I1JE11_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G11570.1}

Sequence

Transcript Sequence

>Glyur000740s00028697.1
CCTCACTGCAATCTCCGATCACCCTCTCTCCTCCCCCATTTTCTCTCATCCTCTCTCTCTCTCTCTTCTCTATCTCTTTCCTTTCCCTTTCCCTTTTATTGTTTTCACCCTCCACCGACTCGGTGCCCTGACCCGCTCTGAGTCAACCGCGGACTCAGTCCACGGTCGGTTCGGTTCGAACCCGTCATGGAGATCGCTCACGAGCCACCGCCTTCCCTCGACGGGAGCCCCATCGCCGCCGAGACCGTCGCGAACTCTCCGTCGTCTTCCTCCTCTTCTCCTTCCTCTTNCTCATCCTCTTCCGCTTCGTCGCCACGCGGCTCGAAGGGAAAGGAGATCGAAGCCACCNCGTCAACGGCGCCGCCGCCTCCGCCTGCAAAGTACGACGACGATGACGAGGAGGAAGAGGACGTGTGCCGGATATGCCGGAACCCTGGCGACGCCGAGAATCCCCTCCGGTATCCATGCGCGTGTAGCGGGAGCATCAAGTTTGTGCATCAGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGCCAATGCGAGGTCTGCAAGCATGCATTTTCCTTCTCTCCGGTTTATGCNGAGAATGCCCCAGCCAGATTACCTTTTCAAGAGTTTGTGGTTGGAATTGCAATGAAAGCTTGCCATGTTCTGCAATTCTTTTTGCGTCTGAGTTTTGTGTTATCTGTGTGGCTCTTAATTATACCTTTCATAACATTCTGGATATGGCGGTTAGCTTTTGTGAGGAGTTTGGGTGAAGCCCAGAGGTTATTCTTAAGCCATTTGTCAACNGCAGTTATTCTCACTGATTGCCTCCATGGTTTCCTCCTTTCTGCAAGCATCGTCTTCATTTTTCTTGGGGCCACTTCTTTGAGAGATTACTTTAGGCATTTGCGAGAAATTGGGGGACAGGATGCTGATAGAGACGATGAAGTGGACAGAAATGGTGCTCGAATTGCTAGAAGACCTCCTGGACAAGCTAACCGTAATATAAACGGTGATGGGAATGGTGAAGATGCTGGTGGAGCACAAGGAATTGCAGGGGCAGGTCAAGTAATTAGAAGAAATGCTGAAAATGTTGCTGCACGGTGGGAGATGCAAGCAGCACGTCTTGAGGCTCATGTTGAGCAGATGTTTGATGGTCTGGATGATGCTGATGGAGCAGANGATGTACCCTTTGATGAACTTGTTGGCATGCAGGGTCCGGTTTTTCATTTGGTTGAAAATGCATTTACTGTACTGGCAAGCAATATGATTTTCCTTGGCGTTGTAATCTTTGTGCCCTTCTCATTGGGCCGCATCATACTTCATTATCTATCGTGGTTCTTTTCAACTGGTAGTGATCCCGTTTTATCAGTGGTGGTCCCACCTACAGACACTTCTCTGTCCTTAGCAAATATTACGTTAAAAAATGCATTAACAGCTGTTAAAAATTTGTCATCTGATGCTCAAGAAGGTGGGTCAATTGGNCAGATTGCAGAAATGCTAAAAGTGAATGCAAGTGGATTGAGTGAAATGTCAAACAACATTAGTGCATCTGTTTCAGCTGATCTCTTGAAAGAAGGGTCAATTGGAACTTCAAAGCTTTCTGATGTTNCTACTCTGGCTATTGGATATATTTTCATATTGACTCTAATTTTCTGCTACCTTGGCATTGTTGCCTTAATTCGTTACACAAAGGGTGAACCTTTGACTACAGGAAGGTTCTATGGCATTGCTTCTATAGCAGAGACAATTCCATCTCTCTTCAGACAATTTTTGGCAGCAATGAGGCATTTGATGACCATGGTTAAGGTTGCTTTCCTATTAGTCATTGAACTCGGGGTATTTCCCCTGATGTGTGGGTGGTGGCTTGATGTTTGTACCATACAGATGTTTGGGAAGACAATGGTTCACAGAGTTCAGTTCTTTTCTGCATCTCCTTTAGCAAGCTCATTGGTTCATTGGGTTGTAGGGATTGTGTACATGCTACAAATTAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTGCGGAATGGGGTTTTGTACTTCCTTCGGGATCCTGCTGATCCAAACTACAATCCATTCCGTGATCTGATAGATGATCCTGTCCACAAACATGCTCGCAGGGTTCTGTTATCTGTTGCAGTTTATGGGAGTTTGATTGTTATGCTGGTATTTTTGCCAGTCAAACTTGCCATGCGGATGGCACCTTCCATTTTCCCACTTGACATATCGCTATCTGATCCATTCACCGAAATTCCAGCTGACATGCTTCTCTTTCAGATCTGTATACCATTTGCTATTGAGCATTTTAAATTGAGGACAACTATTAAATCCCTACTTCGCTATTGGTTTACGGCAGTTGGTTGGGCACTTGGTTTAACTGATTTCTTACTGCCTAGACCTGATGACAATGGTAATCAAGAAAATGGAAACGGGGAGGCAGCTAGGCAGGAAAGGCTACAGATGGTACAAGCAGTGGTTCATGGTCAAGGTGTGGTGCCATATGCAGGCGACGATTTGAACAGAGTCATTAATGCAGATTCTGGAGAGGATTATGATAANGATGAACAATCTGATTCTGATTATGCCTTTGTGCTTCGCATTGTTCTTTTACTGGTGATTGCTTGGATGACTCTCCTTGTGTTCAACTCTGCCCTGATAGTTGTACCAATTTCACTGGGACGGGCACTTTTCAATTCTATACCTCGTCTTCCCATAACTCATGGCATTAAGTGCAATGATCCGTATGCATTCATCATTGGAAGCTATGTGATCTGGACTGCTGTAGCGGGAGTTAGATACTCAATTGAGCAAATTAGAAGAAGGAGGACTTCAGCTTTGTTGATCCAAGTATGGAAGTGGTTTGCCATTATTGTGAAGAGTTCTGCCCTTTTGTCTATATGGATATTTGTCATCCCAGTGCTAATTGGGCTTCTTTTTGAGCTTTTGGTCATTGTGCCAATGAGAGTTCCGGTGGATGAAAGCCCNGTATTCCTCCTTTATCAAGACTGGGCATTAGGCCTTATATTTCTCAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTTGTGGATGAAAGTTGGCGAGTAAAGTTTGAGAGGGTGAGAGAGGATGGTTTCTCCAGGCTGCAAGGTCTCTGGGTCCTTCGGGAGATTGTACTTCCAATCATGATGAAACTATTGACAGCATTGTGTGTACCTTACGTTTTGGCGAGAGGGGTGTTTCCAGTGCTTGGGTACCCCTTGGTGGTCAATTCTGCTGTCTATCGGTTTGCATGGTTGGGATGCCTCTCTTTCAGTTTCCTATACTTTTGTGCCAAGAGATTTCACGTTTGGTTCACAAATCTCCATAATTCAATACGCGATGACCGGTATCTGATTGGCCGGAGGTTGCACAACTTTGGAGAACATGTTGAGAAGGAAAATGAGCCAGGAACTTCTACAGGAGTGCAGGATACTATTTTACTAGGTACAGGTTTAATTCAACGTGATCGTGAAGCAGATGTTGGACTACGGTTGAGGCGCATAAATCAACAGGCGGGCTGA

Protein Sequence

>Glyur000740s00028697.1
MEIAHEPPPSLDGSPIAAETVANSPSSSSSSPSSXSSSSASSPRGSKGKEIEATXSTAPPPPPAKYDDDDEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGIAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADRDDEVDRNGARIARRPPGQANRNINGDGNGEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAXDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWFFSTGSDPVLSVVVPPTDTSLSLANITLKNALTAVKNLSSDAQEGGSIGQIAEMLKVNASGLSEMSNNISASVSADLLKEGSIGTSKLSDVXTLAIGYIFILTLIFCYLGIVALIRYTKGEPLTTGRFYGIASIAETIPSLFRQFLAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISLSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDNGNQENGNGEAARQERLQMVQAVVHGQGVVPYAGDDLNRVINADSGEDYDXDEQSDSDYAFVLRIVLLLVIAWMTLLVFNSALIVVPISLGRALFNSIPRLPITHGIKCNDPYAFIIGSYVIWTAVAGVRYSIEQIRRRRTSALLIQVWKWFAIIVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIMMKLLTALCVPYVLARGVFPVLGYPLVVNSAVYRFAWLGCLSFSFLYFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEHVEKENEPGTSTGVQDTILLGTGLIQRDREADVGLRLRRINQQAG

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00740	65305	72242	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10661	MARCH6, DOA10	EC:2.3.2.27	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000740s00028697.1	PF12906.2	RINGv	77	123	1.90E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.667
SRR1783600	control	32.415
SRR1783602	moderate drought stress	40.579
SRR1811619	moderate drought stress	40.025

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.710
DRR006520	Root Summer glycyrrhizin high producing strain	34.262
DRR006521	Root Winter glycyrrhizin high producing strain	28.875
DRR006522	Root Winter glycyrrhizin high producing strain	28.127
DRR006523	Root Summer glycyrrhizin low producing strain	46.757
DRR006524	Root Summer glycyrrhizin low producing strain	46.123
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.500
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.376

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	52.150
SRR2868004	Drought Stress(Tissue:root)	60.977
SRR2967015	Control (Tissue:root)	60.766

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	35.773
SRR9715740	Leave	34.870
SRR9715741	Leave	47.936
SRR9715739	Root	30.609
SRR9715742	Root	60.028
SRR9715743	Root	54.736

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.113
SRR8749028	MeJA induced 9h	38.705
SRR8749029	MeJA induced 9h	37.429
SRR8749030	Uninduced	34.398
SRR8749031	Uninduced	47.238
SRR8749032	Uninduced	39.688

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	48.279
SRR8400027	Control-Root	47.049