Gene detail information of Glyur000742s00025061.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G53690.12.00E-51RING/U-box superfamily protein
NRXP_004496771.18.63E-115PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum]
Swissprottr|P0CE10|Y4102_ARATH3.00E-13Putative uncharacterized protein At4g01020, chloroplastic (Precursor)
trEMBLtr|A0A072VQ64|A0A072VQ64_MEDTR3.00E-111Zinc finger protein {ECO:0000313|EMBL:KEH43917.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007421416528424+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000742s00025061.3PF00097.20zf-C3HC41101554.20E-05
Glyur000742s00025061.3PF01485.16IBR1862456.70E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.867
SRR1783600control30.115
SRR1783602moderate drought stress30.318
SRR1811619moderate drought stress30.399

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.986
DRR006520Root Summer glycyrrhizin high producing strain17.429
DRR006521Root Winter glycyrrhizin high producing strain3.589
DRR006522Root Winter glycyrrhizin high producing strain3.308
DRR006523Root Summer glycyrrhizin low producing strain37.745
DRR006524Root Summer glycyrrhizin low producing strain36.772
DRR006525Leaf Summer glycyrrhizin high producing strain14.553
DRR006526Leaf Summer glycyrrhizin high producing strain14.363

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.228
SRR2868004Drought Stress(Tissue:root)27.490
SRR2967015Control (Tissue:root)35.416

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.527
SRR9715740Leave14.759
SRR9715741Leave16.655
SRR9715739Root33.115
SRR9715742Root45.389
SRR9715743Root41.578

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h40.305
SRR8749028MeJA induced 9h26.279
SRR8749029MeJA induced 9h25.352
SRR8749030Uninduced6.994
SRR8749031Uninduced1.551
SRR8749032Uninduced3.150

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.295
SRR8400027Control-Root26.249

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved