Gene detail information of Glyur000742s00025065.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G11545.19.00E-134xyloglucan endotransglucosylase/hydrolase 8
NRXP_003556027.10PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8-like [Glycine max]
COGYP_005432194.11.00E-14putative beta-glucanase [Selenomonas ruminantium subsp. lactilytica TAM6421]
Swissprottr|Q8L9A9|XTH8_ARATH6.00E-179Probable xyloglucan endotransglucosylase/hydrolase protein 8 (Precursor)
trEMBLtr|I1NGA4|I1NGA4_SOYBN0Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007424025942594+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000742s00025065.1PF00722.16Glyco_hydro_16372201.60E-55
Glyur000742s00025065.1PF06955.7XET_C2452962.20E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control27.474
SRR1783600control27.727
SRR1783602moderate drought stress25.754
SRR1811619moderate drought stress25.554

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.748
DRR006520Root Summer glycyrrhizin high producing strain34.843
DRR006521Root Winter glycyrrhizin high producing strain0.270
DRR006522Root Winter glycyrrhizin high producing strain0.263
DRR006523Root Summer glycyrrhizin low producing strain17.943
DRR006524Root Summer glycyrrhizin low producing strain18.084
DRR006525Leaf Summer glycyrrhizin high producing strain2.548
DRR006526Leaf Summer glycyrrhizin high producing strain2.467

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)88.003
SRR2868004Drought Stress(Tissue:root)37.169
SRR2967015Control (Tissue:root)34.288

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.929
SRR9715740Leave0.263
SRR9715741Leave1.323
SRR9715739Root32.883
SRR9715742Root22.584
SRR9715743Root20.634

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.269
SRR8749028MeJA induced 9h6.683
SRR8749029MeJA induced 9h4.488
SRR8749030Uninduced1.655
SRR8749031Uninduced0.223
SRR8749032Uninduced1.069

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.220
SRR8400027Control-Root33.002

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved