Gene detail information of Glyur000743s00019287.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G20060.12.00E-47ubiquitin-conjugating enzyme19
NRXP_004496290.11.16E-130PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Cicer arietinum]
COGYP_008797956.12.00E-10ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|Q9LJZ5|UBC19_ARATH3.00E-68Ubiquitin-conjugating enzyme E2 19
trEMBLtr|M5XKU9|M5XKU9_PRUPE1.00E-119Uncharacterized protein {ECO:0000313|EMBL:EMJ19665.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007433645139067-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06688UBE2C, UBC11 EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000743s00019287.1PF00179.21UQ_con471831.10E-42


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.277
SRR1783600control20.211
SRR1783602moderate drought stress15.057
SRR1811619moderate drought stress14.918

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.239
DRR006520Root Summer glycyrrhizin high producing strain34.535
DRR006521Root Winter glycyrrhizin high producing strain58.569
DRR006522Root Winter glycyrrhizin high producing strain56.602
DRR006523Root Summer glycyrrhizin low producing strain39.039
DRR006524Root Summer glycyrrhizin low producing strain38.275
DRR006525Leaf Summer glycyrrhizin high producing strain38.442
DRR006526Leaf Summer glycyrrhizin high producing strain37.647

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.914
SRR2868004Drought Stress(Tissue:root)58.667
SRR2967015Control (Tissue:root)46.358

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave50.371
SRR9715740Leave48.564
SRR9715741Leave71.012
SRR9715739Root12.716
SRR9715742Root29.797
SRR9715743Root26.850

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.426
SRR8749028MeJA induced 9h17.447
SRR8749029MeJA induced 9h16.506
SRR8749030Uninduced26.433
SRR8749031Uninduced26.034
SRR8749032Uninduced24.519

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.077
SRR8400027Control-Root31.663

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved