Gene detail information of Glyur000744s00021927.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G77510.1 | 0 | PDI-like 1-2 |
| NR | XP_003545643.1 | 0 | PREDICTED: protein disulfide-isomerase-like [Glycine max] |
| COG | YP_006412802.1 | 3.00E-15 | thioredoxin [Thiocystis violascens DSM 198] |
| Swissprot | tr|P29828|PDI_MEDSA | 0 | Protein disulfide-isomerase (Precursor) |
| trEMBL | tr|K7M6X1|K7M6X1_SOYBN | 0 | Protein disulfide-isomerase {ECO:0000256|RuleBase:RU361130} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00744 | 5593 | 11871 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09580 | PDIA1, P4HB | EC:5.3.4.1 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000744s00021927.1 | PF00085.15 | Thioredoxin | 40 | 147 | 3.20E-31 |
| Glyur000744s00021927.1 | PF13848.1 | Thioredoxin_6 | 176 | 360 | 6.50E-22 |
| Glyur000744s00021927.1 | PF00085.15 | Thioredoxin | 384 | 481 | 1.20E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.076 |
| SRR1783600 | control | 33.181 |
| SRR1783602 | moderate drought stress | 16.211 |
| SRR1811619 | moderate drought stress | 16.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.530 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 35.097 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.030 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.757 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.833 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.386 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.082 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.519 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.583 |
| SRR2967015 | Control (Tissue:root) | 10.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.942 |
| SRR9715740 | Leave | 0.662 |
| SRR9715741 | Leave | 1.580 |
| SRR9715739 | Root | 2.177 |
| SRR9715742 | Root | 5.889 |
| SRR9715743 | Root | 4.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.087 |
| SRR8749028 | MeJA induced 9h | 0.825 |
| SRR8749029 | MeJA induced 9h | 1.536 |
| SRR8749030 | Uninduced | 0.058 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.543 |
| SRR8400027 | Control-Root | 14.469 |