Gene detail information of Glyur000747s00029082.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G33420.1 | 9.00E-176 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_004512621.1 | 0 | PREDICTED: PHD finger protein At1g33420-like [Cicer arietinum] |
| Swissprot | tr|Q9C810|Y1342_ARATH | 0 | PHD finger protein At1g33420 |
| trEMBL | tr|I1LC11|I1LC11_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G31980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00747 | 3370 | 8087 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000747s00029082.1 | PF00628.24 | PHD | 624 | 670 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.466 |
| SRR1783600 | control | 2.486 |
| SRR1783602 | moderate drought stress | 2.698 |
| SRR1811619 | moderate drought stress | 2.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.668 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.657 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.805 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.876 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.996 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.998 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.184 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.932 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.896 |
| SRR2967015 | Control (Tissue:root) | 24.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.352 |
| SRR9715740 | Leave | 2.360 |
| SRR9715741 | Leave | 4.186 |
| SRR9715739 | Root | 11.071 |
| SRR9715742 | Root | 4.890 |
| SRR9715743 | Root | 6.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.336 |
| SRR8749028 | MeJA induced 9h | 3.180 |
| SRR8749029 | MeJA induced 9h | 2.458 |
| SRR8749030 | Uninduced | 1.676 |
| SRR8749031 | Uninduced | 3.708 |
| SRR8749032 | Uninduced | 4.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.357 |
| SRR8400027 | Control-Root | 8.767 |