Gene detail information of Glyur000747s00029087.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G15093.11.00E-91catalytic LigB subunit of aromatic ring-opening dioxygenase family
NRAFK45430.11.21E-168unknown [Lotus japonicus]
COGNP_903220.16.00E-68hypothetical protein CV_3550 [Chromobacterium violaceum ATCC 12472]
Swissprottr|Q70FG7|DODA_BETVU2.00E-1204,5-DOPA dioxygenase extradiol
trEMBLtr|I1L3N6|I1L3N6_SOYBN3.00E-169Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G28490.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007471968628321-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15777DOPA EC:1.13.11.- Betalain biosynthesis map00965


Gene Ontology

biological_process

GO:0006725  cellular aromatic compound metabolic process


molecular_function

GO:0008198  ferrous iron binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000747s00029087.1PF02900.13LigB102261.50E-38
Glyur000747s00029087.1PF02900.13LigB2755291.20E-61


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.734
SRR1783600control21.393
SRR1783602moderate drought stress13.403
SRR1811619moderate drought stress14.181

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.081
DRR006520Root Summer glycyrrhizin high producing strain7.177
DRR006521Root Winter glycyrrhizin high producing strain10.051
DRR006522Root Winter glycyrrhizin high producing strain9.996
DRR006523Root Summer glycyrrhizin low producing strain10.117
DRR006524Root Summer glycyrrhizin low producing strain8.751
DRR006525Leaf Summer glycyrrhizin high producing strain3.060
DRR006526Leaf Summer glycyrrhizin high producing strain2.774

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.745
SRR2868004Drought Stress(Tissue:root)2.534
SRR2967015Control (Tissue:root)3.600

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.100
SRR9715740Leave15.004
SRR9715741Leave38.823
SRR9715739Root15.043
SRR9715742Root26.708
SRR9715743Root22.871

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.074
SRR8749028MeJA induced 9h0.305
SRR8749029MeJA induced 9h0.193
SRR8749030Uninduced0.125
SRR8749031Uninduced0.436
SRR8749032Uninduced0.355

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.580
SRR8400027Control-Root38.537

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved