Gene detail information of Glyur000747s00029088.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G15093.14.00E-100catalytic LigB subunit of aromatic ring-opening dioxygenase family
NRKHN24452.12.01E-1774,5-DOPA dioxygenase extradiol-like protein [Glycine soja]
COGYP_007511598.12.00E-76extradiol ring-cleavage dioxygenase [Bradyrhizobium oligotrophicum S58]
Swissprottr|Q949R4|DIOXL_ARATH5.00E-125Extradiol ring-cleavage dioxygenase
trEMBLtr|I1MQB9|I1MQB9_SOYBN8.00E-178Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G33280.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007473056833651-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15777DOPA EC:1.13.11.- Betalain biosynthesis map00965


Gene Ontology

biological_process

GO:0006725  cellular aromatic compound metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0008198  ferrous iron binding

GO:0008270  zinc ion binding

GO:0016491  oxidoreductase activity

GO:0016701  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000747s00029088.1PF02900.13LigB62632.40E-68


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.903
SRR1783600control13.596
SRR1783602moderate drought stress12.264
SRR1811619moderate drought stress12.002

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.974
DRR006520Root Summer glycyrrhizin high producing strain14.304
DRR006521Root Winter glycyrrhizin high producing strain7.158
DRR006522Root Winter glycyrrhizin high producing strain6.992
DRR006523Root Summer glycyrrhizin low producing strain4.203
DRR006524Root Summer glycyrrhizin low producing strain5.017
DRR006525Leaf Summer glycyrrhizin high producing strain64.678
DRR006526Leaf Summer glycyrrhizin high producing strain66.006

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)127.987
SRR2868004Drought Stress(Tissue:root)93.831
SRR2967015Control (Tissue:root)108.791

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave70.353
SRR9715740Leave38.080
SRR9715741Leave67.981
SRR9715739Root25.303
SRR9715742Root21.801
SRR9715743Root24.898

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.409
SRR8749028MeJA induced 9h22.230
SRR8749029MeJA induced 9h12.301
SRR8749030Uninduced91.842
SRR8749031Uninduced261.535
SRR8749032Uninduced95.556

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root81.949
SRR8400027Control-Root69.767

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved