Gene detail information of Glyur000747s00029094.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G49160.10methyltransferase 1
NRKHN19261.10DNA (cytosine-5)-methyltransferase 1 [Glycine soja]
COGYP_166300.16.00E-43DNA methylase, C-5 cytosine-specific family [Ruegeria pomeroyi DSS-3]
Swissprottr|P34881|DNMT1_ARATH0DNA (cytosine-5)-methyltransferase 1
trEMBLtr|I1KCC0|I1KCC0_SOYBN0Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007476955176134-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00558DNMT1, dcm EC:2.1.1.37 Cysteine and methionine metabolism map00270
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006306  DNA methylation


molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding

GO:0008168  methyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000747s00029094.1PF12047.3DNMT1-RFD732072.60E-40
Glyur000747s00029094.1PF12047.3DNMT1-RFD3805343.20E-46
Glyur000747s00029094.1PF01426.13BAH7298628.40E-24
Glyur000747s00029094.1PF01426.13BAH90310417.00E-24
Glyur000747s00029094.1PF00145.12DNA_methylase108811309.00E-05
Glyur000747s00029094.1PF00145.12DNA_methylase117315155.40E-36


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.631
SRR1783600control2.643
SRR1783602moderate drought stress1.783
SRR1811619moderate drought stress1.734

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.927
DRR006520Root Summer glycyrrhizin high producing strain2.838
DRR006521Root Winter glycyrrhizin high producing strain0.789
DRR006522Root Winter glycyrrhizin high producing strain0.802
DRR006523Root Summer glycyrrhizin low producing strain2.075
DRR006524Root Summer glycyrrhizin low producing strain2.064
DRR006525Leaf Summer glycyrrhizin high producing strain1.064
DRR006526Leaf Summer glycyrrhizin high producing strain1.011

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.617
SRR2868004Drought Stress(Tissue:root)6.975
SRR2967015Control (Tissue:root)7.578

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.976
SRR9715740Leave0.803
SRR9715741Leave0.917
SRR9715739Root0.667
SRR9715742Root2.458
SRR9715743Root1.877

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.886
SRR8749028MeJA induced 9h12.991
SRR8749029MeJA induced 9h6.566
SRR8749030Uninduced1.152
SRR8749031Uninduced0.826
SRR8749032Uninduced0.526

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.076
SRR8400027Control-Root8.283

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved