Gene detail information of Glyur000748s00025521.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G15870.17.00E-180glycosyl hydrolase family 81 protein
NRXP_007139480.10hypothetical protein PHAVU_008G033000g [Phaseolus vulgaris]
COGYP_008154648.11.00E-64hypothetical protein SCE1572_41440 [Sorangium cellulosum So0157-2]
trEMBLtr|V7B0X4|V7B0X4_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW11474.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007485036254653+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH81


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016998  cell wall macromolecule catabolic process


molecular_function

GO:0052861  glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group

GO:0052862  glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000748s00025521.1PF03639.8Glyco_hydro_8193891.80E-83
Glyur000748s00025521.1PF03639.8Glyco_hydro_814176411.30E-61
Glyur000748s00025521.1PF03639.8Glyco_hydro_816427784.60E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.906
SRR1783600control1.842
SRR1783602moderate drought stress1.334
SRR1811619moderate drought stress1.255

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.350
DRR006520Root Summer glycyrrhizin high producing strain2.368
DRR006521Root Winter glycyrrhizin high producing strain0.062
DRR006522Root Winter glycyrrhizin high producing strain0.046
DRR006523Root Summer glycyrrhizin low producing strain13.289
DRR006524Root Summer glycyrrhizin low producing strain13.002
DRR006525Leaf Summer glycyrrhizin high producing strain5.684
DRR006526Leaf Summer glycyrrhizin high producing strain5.378

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.415
SRR2868004Drought Stress(Tissue:root)13.659
SRR2967015Control (Tissue:root)11.505

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.362
SRR9715740Leave24.843
SRR9715741Leave15.212
SRR9715739Root10.141
SRR9715742Root6.438
SRR9715743Root5.935

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.668
SRR8749028MeJA induced 9h29.499
SRR8749029MeJA induced 9h24.884
SRR8749030Uninduced11.984
SRR8749031Uninduced30.939
SRR8749032Uninduced19.381

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.757
SRR8400027Control-Root8.787

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved