Gene detail

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Gene detail information of Glyur000748s00025532.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69830.1	1.00E-153	alpha-amylase-like 3
NR	XP_007139489.1	0	hypothetical protein PHAVU_008G033800g [Phaseolus vulgaris]
COG	YP_003951996.1	3.00E-102	alpha-amylase [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q94A41\|AMY3_ARATH	2.00E-177	Alpha-amylase 3, chloroplastic (Precursor)
trEMBL	tr\|V7B3M4\|V7B3M4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW11483.1}

Sequence

Transcript Sequence

>Glyur000748s00025532.1
GAACGTGAACGTGAACGTGAACGGGATTCTCTACCCTTTTTTCTTCCTTTTCGCTTCGTACACTTTTTCGTGATTCAACTTTCTTTGCCGTGGAAACCTCTCGGTGTCCGCGCCATTGAGGCACTGTTCCTATCTCTGGGCTCTACGTCACATTCCCAATGCCGCATTTGATCTTCTCCAATTAAAATTACTTCACTCTTTTCAAATCGACGTAAAATCGAGAACGAAGACTCAGCAGCACGTTCTGAACCAGTGTATCTTTGCTGATAATTGTTGGTGATGACTTTGGATATAAAGTTAAAAAGATAAGAAAAAAAAAACAAAGGAAGGAAAGGAATATCGGGATAATAAAATGGGAGTTGCTCTGTTGCCTGATGCAGCAGCGTTTGGGCTTCTTCCACGCTGCCCCTTTGTTCCCAGGCACCCTTTTATCCATAGAATACCTTCAAGTGTGTCAAGAGGAAACAGAAATTATTATTCCTTTACTGACAAGAGGATCTTCAAATCAGTACACACGGTTTTTTCACGCTCGAATGATTCAGATGACATGTTCACAGATGTAGTTGTTGATCAAGATGATTATTCAGGAAGAAATGAAGTTATAGGAATAGAAGATGAATTAATGGTAGCAAAGAAAGCTCTTTCAGAGGCACAAGACAGACAAAAGGCTATTGAGAAAGAGAGAGATCAATTGCTTGAAAAACTTGCTCGTTCTGAGGCTAAAAAACAGGAATACATCACTGCCATTTTACATGACAAAGAAGTAGCTATATCAGAGGTTGAGGCTGCCAAATCTCTTTTCCAGAAAAAGCTGGAGGAATCAGTGGAAGAGAAGTTCACTTTGCAATCTAAGCTGGTCCTTGCCAAACAAGATGCTGTTGATCTTGCAGTGCAGGTTGAGAAGTTAGCAGAGGTTGCTTTCCAGCAGGCAACCTCTCATATACTACAAGATGCTCAACTCAGAATTTCATCTGCTGAAACCACAGCTGCTGAAGCAGCTCATCTGATTGAGAAGCAAATTAAGGATGCAACCGAGGGTACAATATCATCCATTGTGGAGAAGTCAAAATATGCTGTAGAAAGGGCTCTAGTTGTGGCAGAGGAAGCAGGTGAACACGCAAAAGAGGCCATGGAAACATTTATAGATGGTACATCTCCATTTACGGAAATTGCCTCTGTCCAGGCAGAAAATATCAAGTTACAGGGAATGATAAGTGATACAGAATCCCAGTTGATGATTGCAAGAAATGAGATTGATAGACTGAAGATAGAATTGGAGCAAACCAGACAGCAGCTGAAGGCATTTGAACAAAGAGCCATTGATGCTNAGAAAGCTATGCTTGATCTTCAGGAGTCAAGCAAGAAAACCATTCTACAGCAAGAGGAGGAGATGAAATCATCATTGGAGAAAATGAAAAAAGATGTGGCAGAAAGGACGAAGGCGATTTCCAAGGCTTTTAAGACTGACTTGAAAAACATCAAGGCTACTATTGAAGCTGTCAAAGAAGTTGTACATTGTAAAGATANTGCCTACCTAAGAAGATGTGAAGCACTGCAGAGGTCATTAAAGTCATCAGAAGATGCTTTGAAGATGTGGAGACAGAGAGCTGAAATGGCTGAATCACTGCTTATGAAGGAAAGGCTACAAGATGAAGGGGATGAAGATTCTATCTATGTTATTAATGGTGGACGGATAGACCTTTTGACAGATGTTGATTCTCAAAAATGGAAACTACTTAGTGATGGTCCTCGTAGAGAGATACCTCAGTGGATGGCAAGAAGGATTAAGGCTGTCTCCCCCAAATTTCCACCAAAGAAGACTGATATAACTGAAGCATTGACATCAAAGTTCAGATCCTTAGAGTTGCCTAAAGCCGATGAAGTATGGTCTATTGCTCGAGAAAAGCCAAAGGAAGGGGATGTTTTAATTGAACATGTTTTTGAAAGAGAAACAATTGAAAAGAAGCGGAAGGCATTGGAGCGTGCTCTTCAACGGAAGACTATACAGTGGCAGAGAGCCCCTGAACAAACAAAACTAGAGCCAGGAACAGGAACAGGACGTGAGATTGTGTTTCAAGGTTTCAACTGGGAGAGCTGGAGAAGGCGCTGGTATCTGGAATTAGCATCTAAAACTGCTGATTTATCTCAATGTGGGGTGACAGCGGTGTGGCTGCCACCACCAACAGAATCTGTTTCTCCTCAAGGTTACATGCCTTCTGATCTTTACAACTTGAATTCATCCTATGGTTCTGTGGAAGAACTTAAATATTGTATAGAGGAAATGCATTCTCAAGATCTGCTGGCCTTGGGAGATGCTGTACTTAATCATCGTTGTGCACAGAAGCAGAGTCCAAATGGTGTTTGGAACATTTTTGGTGGCAAGCTTGCATGGGGACCTGAAGCAATTGTATGTGATGATCCAAATTTTCAGGGGCGTGGAAATCCTTCAAGTGGGGATATCTTCCATGCTGCACCAAATATTGATCATTCTCAGGACTTTGTGCGAAAAGATATCAAGGAGTGGTTGAACTGGCTTCGCAATGNTATAGGTTTTGATGGATGGCGGCTTGACTTTGTAAGAGGCTTCTCTGGTACGTATGTNAAAGAATATATTGAAGCTTCAAATCCTGCATTTGCCATTGGAGAATATTGGGACAGCTTGGCTTATGAACATGGAAGTTTGTGTTACAACCAAGATGCTCATCGGCAACGGATAGTTAATTGGATCAATGCAACTGGTGGTACTTCATCAGCATTTGATATCACAACAAAGGGGATACTTCATTCTGCTCTGCATGGTGAATATTGGAGACTGATAGATCCTCAAGGGAANCCAACCGGAGTTATGGGATGGTGGCCTTCTCGTGCTGTCACATTCCTAGAGAACCACGATACAGGGTCCACACAAGGTCACTGGCCGTTTCCACGAGATAAGCTCATGCAGGGATATGCATATATTTTGACTCATCCTGGAACTCCTGTGATATTTTATGACCATTTCTATGATTTTGGCATCCATGATGTAATAGCTGAGTTGATTGAGGCTCGGAGACGGGCTGGGATCCACTGTCGGAGCTCTATCAAGATATACCATGCAAACAATGAAGGGTACGTAGCCCAGGTTGGTGATGCACTAGTAATGAAGCTTGGGCAGTTTGATTGGAATCCCTCTAAGGAGAACCAATTGGAAGGGAGCTGGCACAAGTTTGTCGACAAAGGATCAGACTACCAAGTGTGGTTGAGACAATAATTTAATACCACTTAGTAGACATGGCTCTTTTCTGTAATGGAAATTAATAATAGCTTTAATATCCCT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00748	105961	118784	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH13

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0003824 catalytic activity GO:0004556 alpha-amylase activity GO:0005509 calcium ion binding GO:0043169 cation binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000748s00025532.1	PF00128.19	Alpha-amylase	592	880	5.50E-22
Glyur000748s00025532.1	PF07821.7	Alpha-amyl_C2	900	962	3.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.803
SRR1783600	control	4.835
SRR1783602	moderate drought stress	5.284
SRR1811619	moderate drought stress	5.325

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.996
DRR006520	Root Summer glycyrrhizin high producing strain	5.157
DRR006521	Root Winter glycyrrhizin high producing strain	1.454
DRR006522	Root Winter glycyrrhizin high producing strain	1.415
DRR006523	Root Summer glycyrrhizin low producing strain	1.480
DRR006524	Root Summer glycyrrhizin low producing strain	1.378
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.474
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.408

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	11.831
SRR2868004	Drought Stress(Tissue:root)	11.551
SRR2967015	Control (Tissue:root)	11.331

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	9.243
SRR9715740	Leave	5.225
SRR9715741	Leave	8.247
SRR9715739	Root	0.922
SRR9715742	Root	2.252
SRR9715743	Root	1.852

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.122
SRR8749028	MeJA induced 9h	19.989
SRR8749029	MeJA induced 9h	12.476
SRR8749030	Uninduced	11.761
SRR8749031	Uninduced	21.041
SRR8749032	Uninduced	10.148

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	18.587
SRR8400027	Control-Root	20.083