Gene detail

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Gene detail information of Glyur000749s00022593.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22480.1	0	phosphofructokinase 5
NR	XP_003517707.2	0	PREDICTED: 6-phosphofructokinase 5, chloroplastic-like [Glycine max]
COG	YP_847067.1	8.00E-117	diphosphate--fructose-6-phosphate 1-phosphotransferase [Syntrophobacter fumaroxidans MPOB]
Swissprot	tr\|Q8VYN6\|PFKA5_ARATH	0	ATP-dependent 6-phosphofructokinase 5, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03186} (Precursor)
trEMBL	tr\|I1J525\|I1J525_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G03040.1}

Sequence

Transcript Sequence

>Glyur000749s00022593.1
AAATCAATAAACTCTCCTAAAACCTCTCCCTTCGTTTACACCCTTTTGATCACTCTCTGAGATCTCTGATTCTCTCTCTCTCTCTTCACAAACAAAATCCCCTGTTTTTGATGGATACCCTTTCGCACGTGATCACACCCAACCTCCTTACCCTTCATGGCCGTTGCTCCTTTGGGTTATCCCACACCAACCCTCGTCTCCATTCATTGGTAACACCCAGAGTCGCCAATAAAGTTCGCGTCTTTGCAGTGCTTAATAGCCAAAACACCACAACTCCCAAGTCAATTGATTTCAGTGACCCTCATTGGAAAACCAAGTTTAAAGAGGACTTTGAGGCCCGTTTCAGACCACCCCATGTTACTGATATCTTCCCTGATGCCCCTTCTATGCCTTCTACGTTTTGTCTCAAAATGAGAACTCCTACGACTAGAGACTTTCCCGGTAATAATTATCCTTCGGATGAGGAGTGGCATGGATATATTAATGACAATGACAGAGTGCTTCTTAAGACAATATACTATTCATCATCTACGTCTGCTGGTGCTGAGTGCATTGATCCTGATTGTAATTGGGTGGAACANTGGGTTCATCGAGCTGGACCTCGGAAAAAGATATACTTCAAACCAGAAGAAGTAAAGGCAGCCATTGTTACTTGTGGAGGGCTCTGCCCTGGTCTTAATGATGTCATTAGACAGATTGTAATCACACTTGAAATATATGGTGTAACAAAGATCGTCGGTATTCCTTTTGGTTATCGTGGATTTTCTGACAACGAGTTGATAGAAGTGCCGCTGTCGAGGAAAGTGGTCCAAAATATTCATCTTTCAGGTGGAAGCCTATTAGGAGTTTCACGTGGAGGACCTGGAGTCANTGAAATTGTGGACAGTTTGGAGGAAAGAGGGATCAACATGCTCTTTGTGTTGGGTGGAAATGGAACGCATGCCGGTGCAAATGCAATTCACAATGAGTGCTGTAAAAGACGGCTTAAGGTGTCTGTAATTGGAGTGCCTAAAACTATAGACAACGATATTNTATTGATGGACAAAACTTTTGGCTTTGATACTGCGGTTGAAGAAGCACAAAGAGCAATAAATTCTGCATATATTGAGGCACATAGTGCTTATCATGGAATTGGGATTGTGAAATTAATGGGTCGTAGCAGTGGATTCATAGCAATGCATGCTTCCTTAGCNAGTGGACAGATTGACATATGTCTAATTCCTGAGGTTCCTTTCAATTTACATGGACCTCATGGAGTTTTGAGTCATCTCAAGTACCTTATAGAAACAAAGGGATCAGCTGTAGTCTGTGTGGCGGAGGGAGCTGGACAGAATTTAATCCAAAAAACTAATGCTACTGATGCTTCAGGGAATCCTGTATTTGGAGACATTGGTGTATATACCCAACNAGAGACGAAAAAGAATTTCAAGGAGATTGGTATTCATGNTGATGTGAAATATATTGATCCAACATACATGATCCGGGCGTGTCGAGCAAACGCTTCAGATGGAATTTTTTGCACCGTACTTGGACAAAATGCTGTTCATGGTGCATTTGCTGGATATAGTGGCATTACAGTAGGCACATGTAACACACACTTTGCTTACTTTCCCATCCCAGAAGTAATATCTCATCCTAGGTTGGTCGACTGTAACAGTCGAATGTGGCATCGTTGCTTAACTTCAACGGGCCAACCCGATTTCATATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00749	23580	28839	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00850	pfkA, PFK	EC:2.7.1.11	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Glycolysis / Gluconeogenesis	map00010
			Pentose phosphate pathway	map00030
			Fructose and mannose metabolism	map00051
			Galactose metabolism	map00052
			Methane metabolism	map00680
			RNA degradation	map03018
			AMPK signaling pathway	map04152
			Central carbon metabolism in cancer	map05230

------

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000749s00022593.1	PF00365.15	PFK	177	414	1.40E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.547
SRR1783600	control	0.551
SRR1783602	moderate drought stress	0.891
SRR1811619	moderate drought stress	0.903

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.065
DRR006522	Root Winter glycyrrhizin high producing strain	0.063
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.856
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.002

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	5.757
SRR2868004	Drought Stress(Tissue:root)	12.577
SRR2967015	Control (Tissue:root)	7.714

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	6.631
SRR9715740	Leave	2.388
SRR9715741	Leave	6.380
SRR9715739	Root	0.412
SRR9715742	Root	0.340
SRR9715743	Root	0.839

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.059
SRR8749029	MeJA induced 9h	0.084
SRR8749030	Uninduced	0.352
SRR8749031	Uninduced	0.985
SRR8749032	Uninduced	0.219

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.103
SRR8400027	Control-Root	4.416