Gene detail information of Glyur000749s00022603.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G65450.12.00E-128ubiquitin-specific protease 17
NRXP_007158378.10hypothetical protein PHAVU_002G148100g [Phaseolus vulgaris]
Swissprottr|Q9FKP5|UBP17_ARATH2.00E-176Ubiquitin carboxyl-terminal hydrolase 17
trEMBLtr|V7CJL4|V7CJL4_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW30372.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007498709893230+


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000749s00022603.1PF01753.13zf-MYND961331.50E-08
Glyur000749s00022603.1PF00443.24UCH4107192.80E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.102
SRR1783600control7.156
SRR1783602moderate drought stress8.404
SRR1811619moderate drought stress8.306

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.287
DRR006520Root Summer glycyrrhizin high producing strain8.990
DRR006521Root Winter glycyrrhizin high producing strain10.428
DRR006522Root Winter glycyrrhizin high producing strain10.195
DRR006523Root Summer glycyrrhizin low producing strain11.006
DRR006524Root Summer glycyrrhizin low producing strain11.192
DRR006525Leaf Summer glycyrrhizin high producing strain7.985
DRR006526Leaf Summer glycyrrhizin high producing strain7.717

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.897
SRR2868004Drought Stress(Tissue:root)14.399
SRR2967015Control (Tissue:root)15.476

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.328
SRR9715740Leave12.819
SRR9715741Leave11.415
SRR9715739Root0.940
SRR9715742Root8.075
SRR9715743Root6.387

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.560
SRR8749028MeJA induced 9h11.788
SRR8749029MeJA induced 9h7.424
SRR8749030Uninduced4.525
SRR8749031Uninduced4.946
SRR8749032Uninduced2.695

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.474
SRR8400027Control-Root15.237

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved