Gene detail information of Glyur000751s00027031.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G73820.12.00E-85Ssu72-like family protein
NRXP_004513347.11.32E-128PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Cicer arietinum]
trEMBLtr|C6SZ62|C6SZ62_SOYBN1.00E-128Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G11980.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00751101339104274+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15544SSU72 EC:3.1.3.16 mRNA surveillance pathway map03015


Gene Ontology

biological_process

GO:0006397  mRNA processing


cellular_component

GO:0005634  nucleus


molecular_function

GO:0004721  phosphoprotein phosphatase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000751s00027031.1PF04722.8Ssu7221949.70E-80


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.715
SRR1783600control13.346
SRR1783602moderate drought stress12.121
SRR1811619moderate drought stress12.024

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.363
DRR006520Root Summer glycyrrhizin high producing strain21.546
DRR006521Root Winter glycyrrhizin high producing strain15.329
DRR006522Root Winter glycyrrhizin high producing strain16.369
DRR006523Root Summer glycyrrhizin low producing strain14.283
DRR006524Root Summer glycyrrhizin low producing strain14.282
DRR006525Leaf Summer glycyrrhizin high producing strain11.090
DRR006526Leaf Summer glycyrrhizin high producing strain11.401

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.607
SRR2868004Drought Stress(Tissue:root)16.910
SRR2967015Control (Tissue:root)16.714

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.968
SRR9715740Leave30.193
SRR9715741Leave26.493
SRR9715739Root4.342
SRR9715742Root9.912
SRR9715743Root8.872

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.717
SRR8749028MeJA induced 9h11.316
SRR8749029MeJA induced 9h13.542
SRR8749030Uninduced9.948
SRR8749031Uninduced5.378
SRR8749032Uninduced5.122

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.090
SRR8400027Control-Root21.457

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved