Gene detail information of Glyur000752s00022790.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G37520.10Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
NRXP_006594080.10PREDICTED: uncharacterized protein LOC100808999 [Glycine max]
Swissprottr|F4KBP5|CHR4_ARATH3.00E-07Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|K7LZH4|K7LZH4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G19440.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007521034223344-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000752s00022790.1PF00628.24PHD5425841.50E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.320
SRR1783600control9.304
SRR1783602moderate drought stress12.708
SRR1811619moderate drought stress12.724

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.663
DRR006520Root Summer glycyrrhizin high producing strain14.416
DRR006521Root Winter glycyrrhizin high producing strain28.440
DRR006522Root Winter glycyrrhizin high producing strain27.555
DRR006523Root Summer glycyrrhizin low producing strain16.699
DRR006524Root Summer glycyrrhizin low producing strain16.740
DRR006525Leaf Summer glycyrrhizin high producing strain9.859
DRR006526Leaf Summer glycyrrhizin high producing strain9.643

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.636
SRR2868004Drought Stress(Tissue:root)26.226
SRR2967015Control (Tissue:root)29.220

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.848
SRR9715740Leave20.214
SRR9715741Leave21.546
SRR9715739Root4.925
SRR9715742Root23.252
SRR9715743Root20.991

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.525
SRR8749028MeJA induced 9h32.467
SRR8749029MeJA induced 9h13.541
SRR8749030Uninduced17.280
SRR8749031Uninduced13.728
SRR8749032Uninduced12.251

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.794
SRR8400027Control-Root20.692

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved