Gene detail

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Gene detail information of Glyur000752s00022802.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02520.1	2.00E-29
NR	KEH42391.1	0	SANTA (SANT associated) protein [Medicago truncatula]
trEMBL	tr\|A0A072VLC9\|A0A072VLC9_MEDTR	0	SANTA (SANT associated) protein {ECO:0000313\|EMBL:KEH42391.1}

Sequence

Transcript Sequence

>Glyur000752s00022802.1
ATGTCTGACTCCACTCATCAAACTGCTGCAACTCCTTCTTCGAATGACGACACCCACGCCGTCACCGAATCTTCTTCTTTCCTACGAACGGTTTCCTTATACGATTGGTGGTTGATTAANGCCGCAAATGACTTCCAAGGAAAACGTTTAGCCGTCGCAGGCGTCTCATCTAGAAAGGATGAAGCGGTTCGGGTGTTTGTTTCAGCTCCTATTGTCAAAAGATATGATGTGTTTTCCCTGGAGACTGCGGATGGTGTATACCTTATCATCAAGGGCTTCATAAACGAGCAGCGCACGCTCGAAAATGGTTTCGCTCCTGAGGTTTTCAACAGTTTTCTATTTGGCTTTCCTCCAAACTGGGAAAGCTATGCTCTAGGTTGCTTTGGAGAAGAATCAAAAGCNGGCATTGATCCGGGCAATGGTGTTATCAATGCTGGTCTGGATAATGCATCAGCAANTCGTCCAGAGATCTTATCTGAGGGTATGGAAAAATCTATTTCTACTTCTTTGGTATTGCCTGAAGAGTCCCCTGAAAATTGTGAGAAACCATTACCTGAGGATGAATGCAATGCCTCGAAGGAGATGAGCGGGATTAATGTTGCTTATGGTAGAGGCAGGAATAGACGTAGTGCCAGGTTGCATAAAATAGAAGTCCTCGAGCAGAAGAAGCAGCCTGCTTCTGGTGGCCCTCCAAAGCATCAGGATAAAGAGCAAAGCTCTGTCTCAACGGCCTTGGAGAATNGTGATTCGGATACTGCTGTTCCTGATAATGCTTCAGCAATTCGTCTAGAAATATCATCTGATGGTGAGGAAAAGTCTATTACTTCTTTGGCGTCACAGGAAGAGGCCCCAAGAAATTGTGAGAAGCCATTCCTTGAAGATGAACACAATATGTCAAATGAGATGGGTGGGGTTAATGTTGCTTATGGTAGTGGCGGTAATAAACGAAGTGCCCGGTTGCANAATATTAAAGTCTGCCAGCAGAAGAAGCAGCCTGCTTCTGGAGGTTCTCCGAAGCATCCAGATAAAAAGCGGAGCTCTATCTCAACGGCCTTGGAGAATCNTGATTNGGATACTGCTGNTCCTGATAATATATCAGCAATTCGTCCAGAAATATCATCTGATGGTGTGGAAGAACCTTTTCCTACTTCTTTGGCATCACTGGAAGAGGCCCCGAGAGATCGCGAGAAGCCATTACTTGGAGTTGAACACAATATGTCAAATGANATGGGNGGGGTCAATGTTGCTAGCGGTAGTGGCGGACATAGACGTAGTGCCCGGTTGCATAATATCAAAGTCTGTTTGCAGAAGCAGCAACCTGATACTGGNGGTCCTCCAAAGCATCCAGATAAAGACCAAAGATCTACCTCAACGGCCTTGGAGAACCATGACGGAGAAGGACGGGAATGTCCATTGACACCCATTCAGTCACAATCAAAGGGACTAGCAAATACATTGTCTGAGCAGCCCGTTAAAAAATCCGCATCCAGAATTTCAAGAACTTTGTCAGCAAAAACTGAAGGCTGTTATAAAAGAAAGAGGGTGACAGTTAAAACAGAAGCGGTCACGCCTAAGAGAAAAATGATTAAACCTGCATCTTCTGTGAAATCACAAGAAAAGGATGTAAGTCACTTGAACAAGGGAAGCAAACTGAAAATATCCTCAGTTTCTCCAGAGTCATTGAGTCTCAGAAAATCCAGATCTGGTAGGTTACTTCTACCTCCCTTGGAGTTTTGGCGCAATCAAATACCTATTTATAATGCG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00752	110033	113173	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000752s00022802.1	PF09133.5	SANTA	31	127	3.70E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.760
SRR1783600	control	0.850
SRR1783602	moderate drought stress	1.141
SRR1811619	moderate drought stress	1.092

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.625
DRR006520	Root Summer glycyrrhizin high producing strain	0.557
DRR006521	Root Winter glycyrrhizin high producing strain	0.683
DRR006522	Root Winter glycyrrhizin high producing strain	0.732
DRR006523	Root Summer glycyrrhizin low producing strain	0.759
DRR006524	Root Summer glycyrrhizin low producing strain	0.807
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.542
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.566

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.400
SRR2868004	Drought Stress(Tissue:root)	1.928
SRR2967015	Control (Tissue:root)	1.844

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.120
SRR9715740	Leave	0.880
SRR9715741	Leave	0.896
SRR9715739	Root	0.311
SRR9715742	Root	0.930
SRR9715743	Root	0.612

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.491
SRR8749028	MeJA induced 9h	1.725
SRR8749029	MeJA induced 9h	1.180
SRR8749030	Uninduced	0.151
SRR8749031	Uninduced	0.278
SRR8749032	Uninduced	0.255

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.336
SRR8400027	Control-Root	2.285