Gene detail information of Glyur000753s00021286.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G28190.17.00E-17copper/zinc superoxide dismutase 2
NRAEK06467.16.12E-21chloroplast Cu/Zn superoxide dismutase/ribosomal protein L32 fusion protein [Calophyllum inophyllum]
COGYP_003290884.15.00E-06Superoxide dismutase [Rhodothermus marinus DSM 4252]
Swissprottr|P10792|SODCP_PETHY2.00E-21Superoxide dismutase [Cu-Zn], chloroplastic (Precursor)
trEMBLtr|G0Y293|G0Y293_CALIO2.00E-21Chloroplast Cu/Zn superoxide dismutase/ribosomal protein L32 fusion protein {ECO:0000313|EMBL:AEK06467.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007537414575896+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04565SOD1 EC:1.15.1.1 Peroxisome map04146
Longevity regulating pathway - multiple speciesmap04213
Amyotrophic lateral sclerosis (ALS)map05014
Huntington's diseasemap05016
Prion diseasesmap05020


Gene Ontology

biological_process

GO:0006801  superoxide metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004784  superoxide dismutase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000753s00021286.1PF00080.15Sod_Cu691131.20E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.124
SRR1783600control3.514
SRR1783602moderate drought stress5.061
SRR1811619moderate drought stress4.743

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.773
DRR006520Root Summer glycyrrhizin high producing strain2.280
DRR006521Root Winter glycyrrhizin high producing strain2.892
DRR006522Root Winter glycyrrhizin high producing strain2.897
DRR006523Root Summer glycyrrhizin low producing strain4.965
DRR006524Root Summer glycyrrhizin low producing strain4.075
DRR006525Leaf Summer glycyrrhizin high producing strain3.220
DRR006526Leaf Summer glycyrrhizin high producing strain2.960

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.638
SRR2868004Drought Stress(Tissue:root)9.204
SRR2967015Control (Tissue:root)12.152

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.372
SRR9715740Leave6.681
SRR9715741Leave7.365
SRR9715739Root2.826
SRR9715742Root10.894
SRR9715743Root8.422

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.797
SRR8749028MeJA induced 9h13.324
SRR8749029MeJA induced 9h4.157
SRR8749030Uninduced3.498
SRR8749031Uninduced6.086
SRR8749032Uninduced2.500

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.347
SRR8400027Control-Root12.397

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved