Gene detail information of Glyur000754s00024689.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47900.2 | 7.00E-173 | tubby like protein 3 |
| NR | KHN46594.1 | 0 | Tubby-like F-box protein 3 [Glycine soja] |
| Swissprot | tr|Q8VY21|TLP3_ARATH | 0 | Tubby-like F-box protein 3 |
| trEMBL | tr|I1JFG1|I1JFG1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G17160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00754 | 14754 | 18966 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TUB |
| Ubiquitin Family | F-box |
| EAR motif-containing Proteins | TUB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000754s00024689.1 | PF00646.28 | F-box | 46 | 98 | 3.50E-08 |
| Glyur000754s00024689.1 | PF01167.13 | Tub | 111 | 394 | 1.10E-100 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.407 |
| SRR1783600 | control | 29.734 |
| SRR1783602 | moderate drought stress | 30.609 |
| SRR1811619 | moderate drought stress | 30.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.225 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.979 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.726 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.229 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.539 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.271 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.892 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 30.168 |
| SRR2868004 | Drought Stress(Tissue:root) | 40.649 |
| SRR2967015 | Control (Tissue:root) | 42.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.331 |
| SRR9715740 | Leave | 31.711 |
| SRR9715741 | Leave | 22.180 |
| SRR9715739 | Root | 25.563 |
| SRR9715742 | Root | 28.206 |
| SRR9715743 | Root | 25.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.705 |
| SRR8749028 | MeJA induced 9h | 24.898 |
| SRR8749029 | MeJA induced 9h | 16.336 |
| SRR8749030 | Uninduced | 13.766 |
| SRR8749031 | Uninduced | 5.408 |
| SRR8749032 | Uninduced | 7.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 35.117 |
| SRR8400027 | Control-Root | 37.895 |