Gene detail information of Glyur000754s00024695.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06350.1 | 2.00E-105 | dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative |
| NR | XP_002520694.1 | 0 | shikimate dehydrogenase, putative [Ricinus communis] |
| COG | NP_867287.1 | 1.00E-71 | 3-dehydroquinate dehydratase / shikimate 5-dehydrogenase precursor [Rhodopirellula baltica SH 1] |
| Swissprot | tr|Q9SQT8|DHQSD_ARATH | 2.00E-128 | Shikimate dehydrogenase (Precursor) |
| trEMBL | tr|B9S3X5|B9S3X5_RICCO | 0 | Shikimate dehydrogenase, putative {ECO:0000313|EMBL:EEF41656.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00754 | 48481 | 51655 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13832 | aroDE, DHQ-SDH | EC:4.2.1.10 1.1.1.25 | Biosynthesis of amino acids | map01230 |
| Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000754s00024695.1 | PF01487.10 | DHquinase_I | 10 | 122 | 2.80E-17 |
| Glyur000754s00024695.1 | PF08501.6 | Shikimate_dh_N | 136 | 216 | 3.30E-23 |
| Glyur000754s00024695.1 | PF01488.15 | Shikimate_DH | 256 | 362 | 1.70E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.009 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.264 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.947 |
| SRR2967015 | Control (Tissue:root) | 0.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.033 |
| SRR8749028 | MeJA induced 9h | 0.391 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.028 |