Gene detail information of Glyur000754s00024704.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G47990.11.00E-164transducin family protein / WD-40 repeat family protein
NRXP_004496004.10PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Cicer arietinum]
COGYP_003887875.11.00E-21WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
Swissprottr|Q0J3D9|COPA3_ORYSJ2.00E-13Coatomer subunit alpha-3
trEMBLtr|K7LGZ3|K7LGZ3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G02745.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007548712288717-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006364  rRNA processing


cellular_component

GO:0005730  nucleolus


molecular_function

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000754s00024704.1PF00400.27WD401181560.052
Glyur000754s00024704.1PF00400.27WD401621999.80E-06
Glyur000754s00024704.1PF00400.27WD402122416.60E-05
Glyur000754s00024704.1PF09384.5UTP15_C3785231.30E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.936
SRR1783600control9.846
SRR1783602moderate drought stress11.364
SRR1811619moderate drought stress11.391

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.776
DRR006520Root Summer glycyrrhizin high producing strain14.159
DRR006521Root Winter glycyrrhizin high producing strain6.548
DRR006522Root Winter glycyrrhizin high producing strain6.154
DRR006523Root Summer glycyrrhizin low producing strain18.963
DRR006524Root Summer glycyrrhizin low producing strain19.053
DRR006525Leaf Summer glycyrrhizin high producing strain4.015
DRR006526Leaf Summer glycyrrhizin high producing strain3.893

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.570
SRR2868004Drought Stress(Tissue:root)14.818
SRR2967015Control (Tissue:root)12.890

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.661
SRR9715740Leave7.538
SRR9715741Leave4.464
SRR9715739Root14.062
SRR9715742Root17.910
SRR9715743Root16.671

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.119
SRR8749028MeJA induced 9h14.355
SRR8749029MeJA induced 9h8.516
SRR8749030Uninduced2.887
SRR8749031Uninduced1.643
SRR8749032Uninduced1.574

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.384
SRR8400027Control-Root10.114

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved