Gene detail information of Glyur000755s00017977.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17450.1 | 4.00E-18 | RING-H2 finger A3A |
| NR | XP_003547414.1 | 4.36E-80 | PREDICTED: RING-H2 finger protein ATL73-like [Glycine max] |
| Swissprot | tr|Q9FLC6|ATL73_ARATH | 2.00E-30 | RING-H2 finger protein ATL73 (Precursor) |
| trEMBL | tr|I1MGU9|I1MGU9_SOYBN | 2.00E-80 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G16940.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00755 | 31313 | 31837 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000755s00017977.1 | PF13639.1 | zf-RING_2 | 114 | 157 | 5.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.069 |
| SRR1783600 | control | 0.070 |
| SRR1783602 | moderate drought stress | 0.073 |
| SRR1811619 | moderate drought stress | 0.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.177 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.195 |
| SRR2967015 | Control (Tissue:root) | 0.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.536 |
| SRR9715740 | Leave | 5.208 |
| SRR9715741 | Leave | 7.695 |
| SRR9715739 | Root | 0.610 |
| SRR9715742 | Root | 1.833 |
| SRR9715743 | Root | 1.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.608 |
| SRR8400027 | Control-Root | 0.843 |