Gene detail information of Glyur000755s00017995.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39140.5 | 1.00E-08 | RING/U-box superfamily protein |
| NR | XP_004508425.1 | 3.63E-124 | PREDICTED: uncharacterized protein LOC101514622 isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7JGJ7|G7JGJ7_MEDTR | 3.00E-107 | RING-H2 zinc finger protein {ECO:0000313|EMBL:AES91657.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00755 | 93459 | 96207 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.218 |
| SRR1783600 | control | 4.288 |
| SRR1783602 | moderate drought stress | 6.321 |
| SRR1811619 | moderate drought stress | 6.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.672 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.535 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.636 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.674 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.358 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.579 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.865 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.077 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.360 |
| SRR2967015 | Control (Tissue:root) | 1.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.203 |
| SRR9715740 | Leave | 1.963 |
| SRR9715741 | Leave | 0.557 |
| SRR9715739 | Root | 2.271 |
| SRR9715742 | Root | 2.245 |
| SRR9715743 | Root | 1.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.591 |
| SRR8749028 | MeJA induced 9h | 1.367 |
| SRR8749029 | MeJA induced 9h | 0.855 |
| SRR8749030 | Uninduced | 0.637 |
| SRR8749031 | Uninduced | 0.033 |
| SRR8749032 | Uninduced | 0.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.105 |
| SRR8400027 | Control-Root | 7.544 |